View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18395_high_1 (Length: 641)
Name: NF18395_high_1
Description: NF18395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18395_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 9884450 - 9884038
Alignment:
| Q |
18 |
tgtttaacatctctctagaatcatttaatcaaattaaagggtgtttacactagtgagccaattacaacactttgagtttgtatatgcatgcacaaatctt |
117 |
Q |
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| T |
9884450 |
tgtttaacatctctctagaatcatttaatcaaattaaagggtgtttacactagtgagccaattacaacactttgagtttgtatatgtatgcacaaatctt |
9884351 |
T |
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| Q |
118 |
agatcaatgcatatgcatgagaacaacttgattgatttacaacatcatctatgttactttatgtacatgttaccacctcgtggtataatgttatttccta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9884350 |
agatcaatgcatatgcatgagaacaacttgattgatttacaacatcatctatgttactttatgt----gttaccacctcgtggtataatgttatttccta |
9884255 |
T |
|
| Q |
218 |
agattataactctcaacaaagaggatattacaaaatacaaatctgagattagtgccagtacgtgagaacaacatgattgatttacaacatcatctaagtg |
317 |
Q |
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| T |
9884254 |
agattataactctcaacaaagaggatattacaaaatacaaatctgggattagtgcctgtacgtgagaacaacatgattgatttacaacatcatctaagtg |
9884155 |
T |
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| Q |
318 |
taaaccttaatcatcctttatagtagctctttcattgtcatacaagtatgagccaaccataatttgtcttcaaaagttaaaataggccgaaataataagg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
9884154 |
taaaccttaatcatcctttatagtagctctttcattgtcatacaagtatgagccaaccataatttgtcttc-aaagttaaaataggccgaaagaataagg |
9884056 |
T |
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| Q |
418 |
agtattacctagtaccag |
435 |
Q |
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| T |
9884055 |
aatattacctagtaccag |
9884038 |
T |
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