View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18395_high_3 (Length: 480)
Name: NF18395_high_3
Description: NF18395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18395_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 239 - 470
Target Start/End: Original strand, 28092091 - 28092322
Alignment:
| Q |
239 |
attcaattttgtcaataacactagcgcctcaccctgttgtactcctccagccagctttcttcttgaatagcagccaaccacttctcaaccttttcaagga |
338 |
Q |
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| T |
28092091 |
attcaattttgtcaataacactagcgcctcaccctgttgtactcctccagccagctttcttcttgaatagcagccaaccacttctcaaccttttcaagga |
28092190 |
T |
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| Q |
339 |
tttctttccggctgaaagcttcttcttttgtctttgaaatttggtcctcaatttgttctaacatgtgttcatgatttgcagattctgcagagtaattttc |
438 |
Q |
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| T |
28092191 |
tttctttccggctgaaagcttcttcttttgtctttgaaatttggtcctcaatttgttctaacatgtgttcatgatttgcagattctgcagagtaattttc |
28092290 |
T |
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| Q |
439 |
aaacaggataaggagatacaatgaggttcatg |
470 |
Q |
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| T |
28092291 |
aaacaggataaagagatacaatgaggttcatg |
28092322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 28091903 - 28092033
Alignment:
| Q |
51 |
aatatatttgaagaattattctatgtagagggatattcaccaggaattttgtttaataaaacacgcgccttctcagctcgtttcaaggcaagatgtgtgc |
150 |
Q |
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| T |
28091903 |
aatatatttgaagaattattctatgtagagggatattcaccaggaattttgtttaataaaacacgcgccttctcagctcgtttcaaggcaagatgtgtgc |
28092002 |
T |
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| Q |
151 |
ctcttccagcattataacgattatcatccta |
181 |
Q |
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| T |
28092003 |
ctcttccagcattataacgattatcatccta |
28092033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 28091817 - 28091859
Alignment:
| Q |
15 |
aatatgtagacaatcatgaatcaataagccaacttcaatatat |
57 |
Q |
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| T |
28091817 |
aatatgtagacaatcatgaatcaataagccaacttcaacatat |
28091859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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