View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18395_high_5 (Length: 452)
Name: NF18395_high_5
Description: NF18395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18395_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 24 - 305
Target Start/End: Complemental strand, 2169801 - 2169521
Alignment:
| Q |
24 |
ataaaggaaagggactagatcattttattaaacataaaaaagatcaatacatgtaggaatgtcatggtaaacttgagaactggcattatatatgacaatc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2169801 |
ataaaggaaagggactagatcattttattaaacataaaaa-gatcaatacatgtaggaatgtcatggtaaacttgagaactggcattatacatgacaatc |
2169703 |
T |
|
| Q |
124 |
ttctctgttagcaaaatcaacatgagaattgtaannnnnnnngctattggtcaagtggtcggtggtcaagtaaacacacatatggtgaagaagaatgttg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2169702 |
ttctctgttagcaaaatcaacatgagaattgtaattttttttgctattggtcaagtggtcggtggtcaagtaaacacacatatggtgaagaagaatgttg |
2169603 |
T |
|
| Q |
224 |
taactcgagttttaacttgagattccacataagacgtccgcacaaccaaaccattaagttgtaacaacaaggattgtaataa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2169602 |
taactcgagttttaacttgagattccacataagacgtccgcacaaccaaaccattaagttgtaacaataaggattgtaataa |
2169521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 2169492 - 2169353
Alignment:
| Q |
300 |
taataattaaatcatacttagaactcaattctttgatcaaatctataacatcaagtaacgccttcaccacgccaataaaacacacaaaataggttctaac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2169492 |
taataattaaatcatacttagaactcaattctttgatcaaatctataacatcaagtaacgccttcaccacgccaataaaacacacaaaataggttctaac |
2169393 |
T |
|
| Q |
400 |
cacatagttttcgcaccaacaaacatacccaattcatctc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2169392 |
cacatagttttcgcaccaacaaacatacccaattcatctc |
2169353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University