View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18395_low_2 (Length: 544)
Name: NF18395_low_2
Description: NF18395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18395_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 9884353 - 9884038
Alignment:
| Q |
18 |
cttagatcaatgcatatgcatgagaacaacttgattgatttacaacatcatctatgttactttatgtacatgttaccacctcgtggtataatgttatttc |
117 |
Q |
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| T |
9884353 |
cttagatcaatgcatatgcatgagaacaacttgattgatttacaacatcatctatgttactttatgt----gttaccacctcgtggtataatgttatttc |
9884258 |
T |
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| Q |
118 |
ctaagattataactctcaacaaagaggatattacaaaatacaaatctgagattagtgccagtacgtgagaacaacatgattgatttacaacatcatctaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9884257 |
ctaagattataactctcaacaaagaggatattacaaaatacaaatctgggattagtgcctgtacgtgagaacaacatgattgatttacaacatcatctaa |
9884158 |
T |
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| Q |
218 |
gtgtaaaccttaatcatcctttatagtagctctttcattgtcatacaagtatgagccaaccataatttgtcttcaaaagttaaaataggccgaaataata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
9884157 |
gtgtaaaccttaatcatcctttatagtagctctttcattgtcatacaagtatgagccaaccataatttgtcttc-aaagttaaaataggccgaaagaata |
9884059 |
T |
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| Q |
318 |
aggagtattacctagtaccag |
338 |
Q |
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|||| |||||||||||||||| |
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| T |
9884058 |
aggaatattacctagtaccag |
9884038 |
T |
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