View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18395_low_4 (Length: 455)

Name: NF18395_low_4
Description: NF18395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18395_low_4
NF18395_low_4
[»] chr8 (49 HSPs)
chr8 (1-249)||(19403886-19404155)
chr8 (1-249)||(19447668-19447937)
chr8 (68-249)||(19533227-19533408)
chr8 (1-249)||(19354624-19354892)
chr8 (1-220)||(19375781-19376021)
chr8 (1-246)||(19504758-19505009)
chr8 (147-349)||(19409876-19410080)
chr8 (147-349)||(19456896-19457099)
chr8 (147-349)||(19523979-19524182)
chr8 (114-248)||(19470306-19470440)
chr8 (114-248)||(19541230-19541364)
chr8 (114-248)||(19591334-19591468)
chr8 (264-439)||(19447461-19447639)
chr8 (264-439)||(19533437-19533615)
chr8 (264-431)||(19375585-19375756)
chr8 (264-439)||(19403691-19403857)
chr8 (147-246)||(19458650-19458749)
chr8 (147-246)||(19556328-19556427)
chr8 (87-226)||(19336604-19336743)
chr8 (1-68)||(19173528-19173595)
chr8 (264-349)||(19458781-19458865)
chr8 (264-349)||(19556459-19556543)
chr8 (1-68)||(19410144-19410211)
chr8 (1-68)||(19457163-19457230)
chr8 (1-68)||(19458520-19458587)
chr8 (1-68)||(19523848-19523915)
chr8 (1-68)||(19556198-19556265)
chr8 (1-67)||(19389950-19390016)
chr8 (1-68)||(19470219-19470286)
chr8 (264-347)||(19505041-19505124)
chr8 (1-68)||(19541143-19541210)
chr8 (1-68)||(19591488-19591555)
chr8 (264-338)||(19470472-19470546)
chr8 (264-338)||(19541396-19541470)
chr8 (264-338)||(19591228-19591302)
chr8 (1-68)||(19344506-19344573)
chr8 (1-68)||(19373514-19373581)
chr8 (147-244)||(19489293-19489390)
chr8 (1-68)||(19533139-19533206)
chr8 (68-112)||(19410079-19410123)
chr8 (68-112)||(19457098-19457142)
chr8 (68-112)||(19523936-19523980)
chr8 (1-68)||(19336802-19336869)
chr8 (374-434)||(5830638-5830698)
chr8 (183-224)||(19344327-19344368)
chr8 (183-224)||(19373340-19373381)
chr8 (367-412)||(19459068-19459113)
chr8 (367-412)||(19556746-19556791)
chr8 (3-63)||(19489499-19489559)
[»] chr1 (2 HSPs)
chr1 (96-224)||(36315487-36315610)
chr1 (1-58)||(36315343-36315400)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 8e-96; HSPs: 49)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 19404155 - 19403886
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa---------------------aatactcacca 79  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||                     |||||||||||    
T  19404155 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaaacttatcatcattgatgaatattgtttcaaaaagaagagaaatactcacca 19404056  T
Q  80 acttgtttcttgcaatctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcaaaaagttaat 179  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  19404055 acttgtttcttgcaatctgcactccccaactttgggttggaaatttgatacaagtgattttagacacttatcagagtttgttctagttcacaaagttaat 19403956  T
Q  180 gtgaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctactac 249  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19403955 gtcaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctactac 19403886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 19447937 - 19447668
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatga---------------------aaatactcacca 79  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| ||| ||||                     ||||||||||||    
T  19447937 tccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaatattttttcaaaaagaagagaaatactcacca 19447838  T
Q  80 acttgtttcttgcaatctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcaaaaagttaat 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19447837 acttgtttcttgcaatctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcacaaagttaat 19447738  T
Q  180 gtgaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctactac 249  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19447737 gtcaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctactac 19447668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 68 - 249
Target Start/End: Original strand, 19533227 - 19533408
Alignment:
Q  68 aaatactcaccaacttgtttcttgcaatctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttgttctagtt 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19533227 aaatactcaccaacttgtttcttgcaatctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttgttctagtt 19533326  T
Q  168 caaaaagttaatgtgaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctactac 249  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19533327 cacaaagttaatgtcaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctactac 19533408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 19354892 - 19354624
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa---------------------aatactcacca 79  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||                     |||||||||||    
T  19354892 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaatattgtttaaaaaagaagagaaatactcacca 19354793  T
Q  80 acttgtttcttgcaatctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcaaaaagttaat 179  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  19354792 acttgtttcttgcaatctgcactgcccaactttgg-ttggaaatttgatacaactgattttagacccttatcagagtttgttctagttcacaaagttaat 19354694  T
Q  180 gtgaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctactac 249  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19354693 gtcaaatcaactttatctttatttttccactactaaatgttgcacagactagactacctttctctactac 19354624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19376021 - 19375781
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa---------------------aatactcacca 79  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||    
T  19376021 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaatattgtttcaaaaagaagagaaatactcacca 19375922  T
Q  80 acttgtttcttgcaatctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcaaaaagttaat 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  19375921 acttgtttcttgcaatctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttcttgtagttcacaaagttaat 19375822  T
Q  180 gtgaaatcaactttatctttatttttccactactaaatgtt 220  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  19375821 gtcaaatcaactttatctttatttttccactactaaatgtt 19375781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 19504758 - 19505009
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaaaatactcacca-----acttgtt-tcttgcaa 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||   |  |  |     |||||   |||| |||    
T  19504758 tccaccacaaccataagtatatcaatacaacttgtttctttatttcgaaacttatcatgattgatgaaaccccgaaggagaataacttgaactcttacaa 19504857  T
Q  95 tctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcaaaaagttaatgtgaaatcaacttta 194  Q
    |||||||| ||||||||||| | ||||||||||||||| ||||||||| | |||||||||||||||| | ||| | ||||||||||| ||||||||||||    
T  19504858 tctgcactccccaactttggataggaaatttgatacaaatgattttaggcccttatcagagtttgttgtggtttacaaagttaatgtcaaatcaacttta 19504957  T
Q  195 tctttatttttccactactaaatgttgcacaaactagactacctttctctac 246  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19504958 tctttatttttccactgctaaatgttgcacaaactagactacctttctctac 19505009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 147 - 349
Target Start/End: Complemental strand, 19410080 - 19409876
Alignment:
Q  147 ttatcagagtttgttctagttcaaaaagttaatgtgaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctac 246  Q
    |||||||||||| |||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19410080 ttatcagagtttcttctggttcacaatgttaatgtcaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacttttctctac 19409981  T
Q  247 ta--cnnnnnnnnnnnnnngtttactttaatacaataataattgaaggataagtaatgtatatattataacgtccctgttcacaagggacctaagtaaag 344  Q
    ||  |              ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  19409980 tatactttttttaaaagaagtttactttaatacaataataattgaaggataagtaatgtatagattataacgtccctgttcgcaagggacctaagtaaag 19409881  T
Q  345 tttat 349  Q
    |||||    
T  19409880 tttat 19409876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 147 - 349
Target Start/End: Complemental strand, 19457099 - 19456896
Alignment:
Q  147 ttatcagagtttgttctagttcaaaaagttaatgtgaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctac 246  Q
    |||||||||||| |||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19457099 ttatcagagtttcttctggttcacaatgttaatgtcaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacttttctctac 19457000  T
Q  247 tacnnnnnnnnnnnnnn-gtttactttaatacaataataattgaaggataagtaatgtatatattataacgtccctgttcacaagggacctaagtaaagt 345  Q
    ||                ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  19456999 tatacttttttaaaagaagtttactttaatacaataataattgaaggataagtaatgtatagattataacgtccctgttcgcaagggacctaagtaaagt 19456900  T
Q  346 ttat 349  Q
    ||||    
T  19456899 ttat 19456896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 147 - 349
Target Start/End: Original strand, 19523979 - 19524182
Alignment:
Q  147 ttatcagagtttgttctagttcaaaaagttaatgtgaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctac 246  Q
    |||||||||||| |||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19523979 ttatcagagtttcttctggttcacaatgttaatgtcaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacttttctctac 19524078  T
Q  247 ta-cnnnnnnnnnnnnnngtttactttaatacaataataattgaaggataagtaatgtatatattataacgtccctgttcacaagggacctaagtaaagt 345  Q
    ||                ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  19524079 tatacttttttaaaagaagtttactttaatacaataataattgaaggataagtaatgtatagattataacgtccctgttcgcaagggacctaagtaaagt 19524178  T
Q  346 ttat 349  Q
    ||||    
T  19524179 ttat 19524182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 19470306 - 19470440
Alignment:
Q  114 ggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcaaaaagttaatgtgaaatcaactttatctttatttttccactact 213  Q
    ||||||||||||||||||||||||||||||| |||  |||| ||| |||| ||||| || |||||||| |||||||||||||||||||||||||||||||    
T  19470306 ggttggaaatttgatacaactgattttagaccctttacagaatttcttctggttcacaatgttaatgtcaaatcaactttatctttatttttccactact 19470405  T
Q  214 aaatgttgcacaaactagactacctttctctacta 248  Q
    |||||||||||||||||||| ||||||||||||||    
T  19470406 aaatgttgcacaaactagacaacctttctctacta 19470440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 19541230 - 19541364
Alignment:
Q  114 ggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcaaaaagttaatgtgaaatcaactttatctttatttttccactact 213  Q
    ||||||||||||||||||||||||||||||| |||  |||| ||| |||| ||||| || |||||||| |||||||||||||||||||||||||||||||    
T  19541230 ggttggaaatttgatacaactgattttagaccctttacagaatttcttctggttcacaatgttaatgtcaaatcaactttatctttatttttccactact 19541329  T
Q  214 aaatgttgcacaaactagactacctttctctacta 248  Q
    |||||||||||||||||||| ||||||||||||||    
T  19541330 aaatgttgcacaaactagacaacctttctctacta 19541364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 19591468 - 19591334
Alignment:
Q  114 ggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcaaaaagttaatgtgaaatcaactttatctttatttttccactact 213  Q
    ||||||||||||||||||||||||||||||| |||  |||| ||| |||| ||||| || |||||||| |||||||||||||||||||||||||||||||    
T  19591468 ggttggaaatttgatacaactgattttagaccctttacagaatttcttctggttcacaatgttaatgtcaaatcaactttatctttatttttccactact 19591369  T
Q  214 aaatgttgcacaaactagactacctttctctacta 248  Q
    |||||||||||||||||||| ||||||||||||||    
T  19591368 aaatgttgcacaaactagacaacctttctctacta 19591334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 264 - 439
Target Start/End: Complemental strand, 19447639 - 19447461
Alignment:
Q  264 gtttactttaatacaataataattgaaggataagtaa-tgtatatattataacgtccctgttcacaagggacctaagtaaagtttatcttagttta--nn 360  Q
    |||||||||| ||||||||||||||||||| |||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||        
T  19447639 gtttactttagtacaataataattgaaggaaaagtaaatgtatagataataacgtccctgttcacaagggacctaagtaaagtttattttagtttattga 19447540  T
Q  361 nnnnnnaacaacaaaatttattggaaaggagaagagtagaaagagtacttaattaacctacaactcgggaaaagtataa 439  Q
          || ||||||||||||| |||||||||  |||||||||||||||||||||||| | ||||| ||||||||||||    
T  19447539 ttttttaagaacaaaatttattagaaaggagagaagtagaaagagtacttaattaacccataactcaggaaaagtataa 19447461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 264 - 439
Target Start/End: Original strand, 19533437 - 19533615
Alignment:
Q  264 gtttactttaatacaataataattgaaggataagtaa-tgtatatattataacgtccctgttcacaagggacctaagtaaagtttatcttagttta--nn 360  Q
    |||||||||| ||||||||||||||||||| |||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||        
T  19533437 gtttactttagtacaataataattgaaggaaaagtaaatgtatagataataacgtccctgttcacaagggacctaagtaaagtttattttagtttattga 19533536  T
Q  361 nnnnnnaacaacaaaatttattggaaaggagaagagtagaaagagtacttaattaacctacaactcgggaaaagtataa 439  Q
          || ||||||||||||| |||||||||  |||||||||||||||||||||||| | ||||| ||||||||||||    
T  19533537 ttttttaagaacaaaatttattagaaaggagagaagtagaaagagtacttaattaacccataactcaggaaaagtataa 19533615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 264 - 431
Target Start/End: Complemental strand, 19375756 - 19375585
Alignment:
Q  264 gtttactttaatacaataataattgaaggataagtaatgtatatattataacgtccctgttcacaagggacctaagtaaagtttatcttag----tttan 359  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||||||||| ||||    |||      
T  19375756 gtttactttaatacaataataattgaaggataagtaatgtatagataataacgtccctgttcacaagggacctgactaaagtttattttagttttttttt 19375657  T
Q  360 nnnnnnnaacaacaaaatttattggaaaggagaagagtagaaagagtacttaattaacctacaactcgggaa 431  Q
           |||||||||||||||| |||||||||  |||||||||||||||||||||||| | ||||| ||||    
T  19375656 tttttttaacaacaaaatttattagaaaggagagaagtagaaagagtacttaattaacccataactcaggaa 19375585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 264 - 439
Target Start/End: Complemental strand, 19403857 - 19403691
Alignment:
Q  264 gtttactttaatacaataataattgaaggataagtaa-tgtatatattataacgtccctgttcacaagggacctaagtaaagtttatcttagtttannnn 362  Q
    ||||||||||||  |||||||||||||||||| |||| |||||| || ||||||||| ||||||||||||||||||||||||||||| ||  |||         
T  19403857 gtttactttaattaaataataattgaaggataggtaaatgtatagataataacgtccatgttcacaagggacctaagtaaagtttatttt--ttt----- 19403765  T
Q  363 nnnnaacaacaaaatttattggaaaggagaagagtagaaagagtacttaattaacctacaactcgggaaaagtataa 439  Q
        |||||||||||||||| |||||||||  |||||||||||||||||||||||| | ||||||||||||||||||    
T  19403764 ---taacaacaaaatttattagaaaggagagaagtagaaagagtacttaattaacccataactcgggaaaagtataa 19403691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 19458650 - 19458749
Alignment:
Q  147 ttatcagagtttgttctagttcaaaaagttaatgtgaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctac 246  Q
    ||||||||||||||| | ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19458650 ttatcagagtttgttgtggttcacaatgttaatgtcaaatcaactttatctttatttttccactaataaatgttgcacaaactagactacctttctctac 19458749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 19556328 - 19556427
Alignment:
Q  147 ttatcagagtttgttctagttcaaaaagttaatgtgaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctctac 246  Q
    ||||||||||||||| | ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19556328 ttatcagagtttgttgtggttcacaatgttaatgtcaaatcaactttatctttatttttccactaataaatgttgcacaaactagactacctttctctac 19556427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 19336743 - 19336604
Alignment:
Q  87 tcttgcaatctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcaaaaagttaatgtgaaat 186  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||   ||||||| ||||  ||||  |||| | | ||||| | ||||    
T  19336743 tcttgcaatatgcactgcgcaactttgggttggaaatttgatacaagtgattttaggtccttatcatagttccttctgtttcagacaattaatctcaaat 19336644  T
Q  187 caactttatctttatttttccactactaaatgttgcacaa 226  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  19336643 caactttatctttatttttccaccacaaaatgttgcacaa 19336604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19173528 - 19173595
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19173528 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaa 19173595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 19458781 - 19458865
Alignment:
Q  264 gtttactttaatacaataataattgaaggataagtaatgtatatattataacgtccctgttcacaagggacctaagtaaagtttat 349  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||| |||| |||||||||||||||||||||||||||||    
T  19458781 gtttactttaatacaataataattgaaggataaggaatgtata-ataataatgtccttgttcacaagggacctaagtaaagtttat 19458865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 19556459 - 19556543
Alignment:
Q  264 gtttactttaatacaataataattgaaggataagtaatgtatatattataacgtccctgttcacaagggacctaagtaaagtttat 349  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||| |||| |||||||||||||||||||||||||||||    
T  19556459 gtttactttaatacaataataattgaaggataaggaatgtata-ataataatgtccttgttcacaagggacctaagtaaagtttat 19556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19410211 - 19410144
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19410211 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaa 19410144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19457230 - 19457163
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19457230 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaa 19457163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19458520 - 19458587
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  19458520 tccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaa 19458587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19523848 - 19523915
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19523848 tccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaa 19523915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19556198 - 19556265
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  19556198 tccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaa 19556265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 19390016 - 19389950
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatga 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  19390016 tccaccacaaccataagtatatcaatacaacttgtttctttatttcatagcttatcatgattgatga 19389950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19470219 - 19470286
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  19470219 tccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaa 19470286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 19505041 - 19505124
Alignment:
Q  264 gtttactttaatacaataataattgaaggataagtaatgtatatattataacgtccctgttcacaagggacctaagtaaagttt 347  Q
    |||||| ||||||||||||||||||||||||  |||||||||| || |||||| || |||||||||||||||||||||||||||    
T  19505041 gtttacattaatacaataataattgaaggatttgtaatgtatagataataacgcccttgttcacaagggacctaagtaaagttt 19505124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19541143 - 19541210
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  19541143 tccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaa 19541210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19591555 - 19591488
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  19591555 tccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaa 19591488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 19470472 - 19470546
Alignment:
Q  264 gtttactttaatacaataataattgaaggataagtaatgtatatattataacgtccctgttcacaagggacctaa 338  Q
    |||||||||||||||||||||||||||||||||| || ||||| || ||||||||| ||||||||||||||||||    
T  19470472 gtttactttaatacaataataattgaaggataagaaacgtatagataataacgtccttgttcacaagggacctaa 19470546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 19541396 - 19541470
Alignment:
Q  264 gtttactttaatacaataataattgaaggataagtaatgtatatattataacgtccctgttcacaagggacctaa 338  Q
    |||||||||||||||||||||||||||||||||| || ||||| || ||||||||| ||||||||||||||||||    
T  19541396 gtttactttaatacaataataattgaaggataagaaacgtatagataataacgtccttgttcacaagggacctaa 19541470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 19591302 - 19591228
Alignment:
Q  264 gtttactttaatacaataataattgaaggataagtaatgtatatattataacgtccctgttcacaagggacctaa 338  Q
    |||||||||||||||||||||||||||||||||| || ||||| || ||||||||| ||||||||||||||||||    
T  19591302 gtttactttaatacaataataattgaaggataagaaacgtatagataataacgtccttgttcacaagggacctaa 19591228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19344573 - 19344506
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || ||||||    
T  19344573 tccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaa 19344506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19373581 - 19373514
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || ||||||    
T  19373581 tccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaa 19373514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 19489390 - 19489293
Alignment:
Q  147 ttatcagagtttgttctagttcaaaaagttaatgtgaaatcaactttatctttatttttccactactaaatgttgcacaaactagactacctttctct 244  Q
    ||||||||||| ||| | ||||| | | ||||| | |||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||||||||    
T  19489390 ttatcagagttcgttttggttcacacaattaatctcaaatcaactttatctttattttaccactaccaaatgttgcacaatctagagtacctttctct 19489293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19533139 - 19533206
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| ||| |||||    
T  19533139 tccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaa 19533206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 19410123 - 19410079
Alignment:
Q  68 aaatactcaccaacttgtttcttgcaatctgcactgcccaacttt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19410123 aaatactcaccaacttgtttcttgcaatctgcactgcccaacttt 19410079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 19457142 - 19457098
Alignment:
Q  68 aaatactcaccaacttgtttcttgcaatctgcactgcccaacttt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19457142 aaatactcaccaacttgtttcttgcaatctgcactgcccaacttt 19457098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 19523936 - 19523980
Alignment:
Q  68 aaatactcaccaacttgtttcttgcaatctgcactgcccaacttt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19523936 aaatactcaccaacttgtttcttgcaatctgcactgcccaacttt 19523980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19336869 - 19336802
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaa 68  Q
    ||||||||||||||||||||||| | |||| |||||| ||| ||| |||||||||||| |||||||||    
T  19336869 tccaccacaaccataagtatatccaaacaatttgtttatttcttttaaagcttatcatgattgatgaa 19336802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 5830638 - 5830698
Alignment:
Q  374 aaatttattggaaaggagaagagtagaaagagtacttaattaacctacaactcgggaaaag 434  Q
    ||||||||| |||| ||||  |||| |||||||||||| |||||| |||||||||||||||    
T  5830638 aaatttattagaaatgagagaagtacaaagagtacttacttaacccacaactcgggaaaag 5830698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 19344368 - 19344327
Alignment:
Q  183 aaatcaactttatctttatttttccactactaaatgttgcac 224  Q
    |||||||||||||||||||||||| ||| | |||||||||||    
T  19344368 aaatcaactttatctttatttttcaactgcaaaatgttgcac 19344327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 19373381 - 19373340
Alignment:
Q  183 aaatcaactttatctttatttttccactactaaatgttgcac 224  Q
    |||||||||||||||||||||||||| | | |||||||||||    
T  19373381 aaatcaactttatctttatttttccagtgcaaaatgttgcac 19373340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Original strand, 19459068 - 19459113
Alignment:
Q  367 aacaacaaaatttattggaaaggagaagagtagaaagagtacttaa 412  Q
    |||||| ||||||||| |||||||||  ||||||||||||||||||    
T  19459068 aacaaccaaatttattagaaaggagagcagtagaaagagtacttaa 19459113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Original strand, 19556746 - 19556791
Alignment:
Q  367 aacaacaaaatttattggaaaggagaagagtagaaagagtacttaa 412  Q
    |||||| ||||||||| |||||||||  ||||||||||||||||||    
T  19556746 aacaaccaaatttattagaaaggagagcagtagaaagagtacttaa 19556791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 19489559 - 19489499
Alignment:
Q  3 caccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatcattg 63  Q
    ||||||||||| ||| ||||||| |||   ||||||||||||| |||||||||||| ||||    
T  19489559 caccacaaccaaaagcatatcaaaacagtctgtttctttattttaaagcttatcatgattg 19489499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 36315487 - 36315610
Alignment:
Q  96 ctgcactgcccaactttgggttggaaatttgatacaactgattttagacacttatcagagtttgttctagttcaaaaagttaatgtgaaatcaactttat 195  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| | ||    |||  | ||||| ||||| | | ||||| | |||||||||||||    
T  36315487 ctgcactgcccaactttggattggaaatttgatacaagtgattttaggc-ct----agaaatcgttctggttcacacaattaatttcaaatcaactttat 36315581  T
Q  196 ctttatttttccactactaaatgttgcac 224  Q
    |||||||||||||| || |||||||||||    
T  36315582 ctttatttttccaccacaaaatgttgcac 36315610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36315343 - 36315400
Alignment:
Q  1 tccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcat 58  Q
    ||||||||||||||||||||||||| | || |||||||||||||  ||||||||||||    
T  36315343 tccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcat 36315400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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