View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18395_low_6 (Length: 382)
Name: NF18395_low_6
Description: NF18395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18395_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 42910794 - 42911165
Alignment:
| Q |
12 |
atcatcattagaaaatattatgtggtctatagatttataatgagctgtccaagtcttcaacaattttccactagtcacctacaattcatcattaacaaca |
111 |
Q |
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| T |
42910794 |
atcatcattagaaaatattatgtggtctacagatttataatgagctgtccaagtcttcaacaattttccactagtcacctacaattcatcataaacaaca |
42910893 |
T |
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| Q |
112 |
caatttcacaaacaaaataatctaaatatagcattaaaccttacatgtaagggagtcttaggatcaaatttttgatcaaacattcacccattttaagtca |
211 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910894 |
caatttcacaaacaaaataatccaaatatagcattaaaccttacatgtaagggagtcttaggatcaaatttttgatcaaacattcacccattttaagtca |
42910993 |
T |
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| Q |
212 |
tattcaataaactattatactcaaaatgtctaattgaggaaatagctaggtttttggatgtttaattagc-nnnnnnntaaaattagacaaatcaaataa |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42910994 |
tattcaataaattattatactcaaaatgtctaattgaggaaatagctaggtttttggatgtttaattagcaaaaaaaataaaattagacaaatcaaataa |
42911093 |
T |
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| Q |
311 |
ttgaaggtttgcatacatacatcccagatataagcagttccagataaagctccttccacaaggtatgtgcct |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |
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| T |
42911094 |
ttgaaggtttgcatacatacatcccagatataagcagttccagataaagcacctcccacaaggtatatgcct |
42911165 |
T |
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