View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18395_low_8 (Length: 339)
Name: NF18395_low_8
Description: NF18395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18395_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 26147258 - 26147572
Alignment:
| Q |
17 |
ttgaattcatccactgcttcacattcttgataagttctcaaactgacaaatcctatagttcaaattattggctacatgattgttatatagattcttgact |
116 |
Q |
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| T |
26147258 |
ttgaattcatccactgcttcacattcttgataagttctcaaactgacaaatcctatagttcaaattattggctacatgattgttatatagattcttgact |
26147357 |
T |
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| Q |
117 |
ggaatcaatccaattctcaaaccactatggtcgttattataataaacgatgaacatgttgtattgtaaaaatgttattatgaaggaattcttatattatt |
216 |
Q |
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| T |
26147358 |
ggaatcaatccaattctcaaaccactatggtcgttattataataaacgatgaacatgttgtattgtaaaaatgttattatgaaggaattcatatattatt |
26147457 |
T |
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| Q |
217 |
gtaggttttctatattgatataggtacatgcaagttgggaatgcagttgcagttccagtgtcaccagttttaggatacagtcttggccttgcatatcaca |
316 |
Q |
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| T |
26147458 |
gaaggttttctatattgatataggtacatgcaagttgggaatgcagttgcagttccagtgtctcgagttttaggatacagtcttggccttgcatatcaag |
26147557 |
T |
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| Q |
317 |
gtgttgctgatgatg |
331 |
Q |
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| T |
26147558 |
ttgttgctgctgatg |
26147572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 221 - 331
Target Start/End: Complemental strand, 33872546 - 33872436
Alignment:
| Q |
221 |
gttttctatattgatataggtacatgcaagttgggaatgcagttgcagttccagtgtcaccagttttaggatacagtcttggccttgcatatcacagtgt |
320 |
Q |
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||||| ||||||||||||||||| ||||||||||||||| |||||||||||| ||| | | || |||||||||||||||||||||||||||||| |||| |
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| T |
33872546 |
gttttatatattgatataggtacgtgcaagttgggaatgtagttgcagttccggtggctcgagctttaggatacagtcttggccttgcatatcaaggtgt |
33872447 |
T |
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| Q |
321 |
tgctgatgatg |
331 |
Q |
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| T |
33872446 |
tgctgctgatg |
33872436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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