View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18396_high_12 (Length: 343)
Name: NF18396_high_12
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18396_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 53635912 - 53636174
Alignment:
| Q |
1 |
attatttcaaaagctaattcttatccattttatctccccttttcaactatcaagtggccctttgttttttgcttttcttcctttctccccatcttgtatg |
100 |
Q |
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| T |
53635912 |
attatttcaaaagctaattcttatccattttatctccccttttcaactatcaagtggccctttgttttttgcttttcctcctttctccccatcttgtatg |
53636011 |
T |
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| Q |
101 |
attttggtggaatatatatataagctgatt-----cnnnnnnnnnngtgaacatggttatttcaggcatcaagaaatgaatgctctatttttatgttgac |
195 |
Q |
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| T |
53636012 |
attttggtgga--atatatataagctgattaaaaaataaaaaaaaagtgaacatggttatttcaggcatcaagaaatgaatgctctatttttatgttgac |
53636109 |
T |
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| Q |
196 |
taagaaggagtatgacatatactaatactactattgaagttacatgaattctaattactgtactc |
260 |
Q |
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| T |
53636110 |
taagaaggagcatgacatatactaatactactattgaagttacatgaattctaattactgtactc |
53636174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 48336481 - 48336427
Alignment:
| Q |
142 |
gtgaacatggttatttcaggcatcaagaaatgaatgctctatttttatgttgact |
196 |
Q |
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| T |
48336481 |
gtgaacatggttatttcatgcatcaagaaatgaatgttctattttcatgttgact |
48336427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 48336530 - 48336479
Alignment:
| Q |
2 |
ttatttcaaaagctaattcttatccattttatctccccttttcaactatcaagtg |
56 |
Q |
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| T |
48336530 |
ttatttcaaaagctaattctcatccattttat---ccctcttcaactatcaagtg |
48336479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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