View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18396_high_13 (Length: 338)
Name: NF18396_high_13
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18396_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 34679263 - 34679084
Alignment:
| Q |
17 |
atattggagggctattagtataggtaattatatatacaacaaagataaaattgtacagtcagaccctcgtctctcccacaaattgtcact-----tca-c |
110 |
Q |
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| T |
34679263 |
atattggaggactattagtataggtaattatatatacaacaa-gataaaattgtacagtcagaccctcgtctctcccacaaattgtcactggcactcagc |
34679165 |
T |
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| Q |
111 |
tgggtgcaatttgagatatcttgagtgaggaaaatttgatttaaatagatatttagag-cttgagagtaaagtttcaaatt |
190 |
Q |
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| T |
34679164 |
tgggtgcaatttgagatatcttgagtgaggaaaatttgatttaaatagatatttagagtgaagagagtaaagtttcaaatt |
34679084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 34679018 - 34678933
Alignment:
| Q |
190 |
tatgggactgactatatctatatctagtgttcacacaaattgttttctactttttatttatatcatagatttagatgatattttaa |
275 |
Q |
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| T |
34679018 |
tatgggactgactatatctatatctagtgttcacacaaattgttttctactttttatttatatcatagatttagatgatattttaa |
34678933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 34678923 - 34678868
Alignment:
| Q |
266 |
gatattttaaagtggttcatagatgataatgaaatatacgatgttgattaaaataa |
321 |
Q |
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| T |
34678923 |
gatattttaaagtggttcatagatgatattgaaatatacgatgttgataaaaataa |
34678868 |
T |
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