View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18396_high_21 (Length: 244)
Name: NF18396_high_21
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18396_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 26406442 - 26406556
Alignment:
| Q |
1 |
aagaatttgacgtggagatcaaagacaaaaaaggaacaaaaaatttagttcctgatcatttgtcaagattggcgaataacgaagccactaacaaggaaaa |
100 |
Q |
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| T |
26406442 |
aagaatttgacgtggagatcaaagacaaaaaaggaacaaagaatttagttcctgatcatttgtcaagattggcgaataacgaagccactaacaaagaaaa |
26406541 |
T |
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| Q |
101 |
agaaatataagaaga |
115 |
Q |
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| T |
26406542 |
agaaatataagaaga |
26406556 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 110 - 235
Target Start/End: Original strand, 26411346 - 26411472
Alignment:
| Q |
110 |
agaagaatttccagatgaaaagttgttcgc-attagagaaagaccatggtttactgatatgacaaacttcaaagcagcaggtgagattccagaagtttac |
208 |
Q |
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||||||||||||||||||||| |||||| | || ||| ||| |||||| ||| |||| |||||||||| ||||| |||||||||||||||| ||| |||| |
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| T |
26411346 |
agaagaatttccagatgaaaaattgttcaccatgagaaaaacaccatgatttgctgacatgacaaactacaaagtagcaggtgagattccaaaagattac |
26411445 |
T |
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| Q |
209 |
aattgggaacaaagacataaattcctc |
235 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
26411446 |
aatcgggaacaaagacataaattcctc |
26411472 |
T |
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