View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18396_high_22 (Length: 239)

Name: NF18396_high_22
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18396_high_22
NF18396_high_22
[»] chr1 (3 HSPs)
chr1 (8-230)||(9883433-9883655)
chr1 (10-203)||(9260708-9260894)
chr1 (12-90)||(31917020-31917098)
[»] chr4 (5 HSPs)
chr4 (10-104)||(19100061-19100155)
chr4 (10-129)||(22321809-22321928)
chr4 (41-106)||(19314599-19314664)
chr4 (24-86)||(19328194-19328256)
chr4 (12-128)||(22336029-22336145)
[»] chr6 (3 HSPs)
chr6 (12-107)||(28912910-28913005)
chr6 (17-82)||(18736669-18736734)
chr6 (41-85)||(22427125-22427169)
[»] chr2 (2 HSPs)
chr2 (18-90)||(33851548-33851620)
chr2 (10-122)||(19898382-19898494)
[»] scaffold0050 (1 HSPs)
scaffold0050 (21-144)||(33407-33530)
[»] chr3 (1 HSPs)
chr3 (20-90)||(21304480-21304550)
[»] chr5 (1 HSPs)
chr5 (41-86)||(26332609-26332654)
[»] scaffold0512 (1 HSPs)
scaffold0512 (10-74)||(10750-10814)
[»] scaffold0032 (1 HSPs)
scaffold0032 (41-145)||(91723-91827)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 9883655 - 9883433
Alignment:
Q  8 aagcaaaggagaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcat 107  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9883655 aagcaaaggaggaaaaatatgtctcaaattcgtgtgtttgtttatgctttaatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcat 9883556  T
Q  108 ttttcacatcattttctaattttcaaatatatcttataacaatattttttgttcacatttgagtaatatccatttttcttatttgtctatatagctacct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9883555 ttttcacatcattttctaattttcaaatatatcttataacaatattttttgttcacatttgagtaatatccatttttcttatttgtctatatagctacct 9883456  T
Q  208 ttccatgcgtttctgatgatgat 230  Q
    |||||||||||||||||||||||    
T  9883455 ttccatgcgtttctgatgatgat 9883433  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 9260894 - 9260708
Alignment:
Q  10 gcaaaggagaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcattt 109  Q
    |||||||||  |||||||| |||||| || | | ||| |||||||||| | |||||||||||||||||| |||||||         || |||||||||||    
T  9260894 gcaaaggaggtaaaatatggctcaaaatcttgtatttttttatgctttaaccatctttctatctcaattgcttgttg---------caggtatgtcattt 9260804  T
Q  110 ttcacatcattttctaattttcaaatatatcttataacaatattttttgttcacatttgagta--atatccatttttcttatttgtctatatagct 203  Q
    |||||| ||||||||| ||| ||||| |||||||||||| |||||||||||||||||||||||  |||| ||||||||||| |||||||| |||||    
T  9260803 ttcacaccattttctattttgcaaatctatcttataacattattttttgttcacatttgagtagtatattcatttttcttaattgtctatgtagct 9260708  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 31917020 - 31917098
Alignment:
Q  12 aaaggagaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaac 90  Q
    ||||||| |||||||||  ||||||||  || |||||||||||||| ||||||||| | |||| |||||||||||||||    
T  31917020 aaaggaggaaaaatatgattcaaattctcatatttgtttatgctttgatcatctttatttctctatttcttgttgtaac 31917098  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 19100061 - 19100155
Alignment:
Q  10 gcaaaggagaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgt 104  Q
    ||||||||||||||||||| || |||||   || |||||||||||||| ||||| ||||| ||||||||||||||| |||| |||| ||||||||    
T  19100061 gcaaaggagaaaaaatatggctaaaattttcatctttgtttatgctttgatcatttttctttctcaatttcttgttataacaagtagaagtatgt 19100155  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 22321809 - 22321928
Alignment:
Q  10 gcaaaggagaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcattt 109  Q
    ||||||||||||||||||| |||||||||   |||||| ||||| ||| ||||||| | | |||  ||||||||||||||| | |    |||||||||||    
T  22321809 gcaaaggagaaaaaatatggctcaaattctcttgtttgcttatgttttcatcatctctatttctttatttcttgttgtaaccaatggtggtatgtcattt 22321908  T
Q  110 ttcacatcattttctaattt 129  Q
    |||| | |||||||||||||    
T  22321909 ttcataccattttctaattt 22321928  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 19314599 - 19314664
Alignment:
Q  41 atgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtca 106  Q
    |||||| |||||||| | ||||||||||| ||||||||| |||||||||  | |||||||||||||    
T  19314599 atgtttatttatgctctgatcatctttctctctcaattttttgttgtaatcaatacaagtatgtca 19314664  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 19328194 - 19328256
Alignment:
Q  24 atatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttg 86  Q
    ||||| ||||||||  ||||||| |||||||||| ||||||||||| || | |||||||||||    
T  19328194 atatggctcaaattattatgtttttttatgctttgatcatctttctttccccatttcttgttg 19328256  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 22336029 - 22336145
Alignment:
Q  12 aaaggagaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcattttt 111  Q
    ||||| ||||||||||| |||||||||   | |||||| ||| ||| || | |||||| |||| | ||||| ||||||| | ||   |||||| ||||||    
T  22336029 aaaggcgaaaaaatatgactcaaattctcttatttgttcatgttttgattagctttctttctctacttcttattgtaactaatagtggtatgttattttt 22336128  T
Q  112 cacatcattttctaatt 128  Q
    |||| ||||||||||||    
T  22336129 cacaccattttctaatt 22336145  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 28912910 - 28913005
Alignment:
Q  12 aaaggagaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcat 107  Q
    ||||||||||| |||||  ||||  ||  ||||||||||||| ||| ||||||||||| |||||||||||| ||||||| |||| ||||| |||||    
T  28912910 aaaggagaaaatatatggatcaacctctcatgtttgtttatgttttgatcatctttctttctcaatttcttattgtaaccagtagaagtaagtcat 28913005  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 18736669 - 18736734
Alignment:
Q  17 agaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttctt 82  Q
    |||||||||||| ||||| |||  || |||||||||||||| ||||||||||| | || |||||||    
T  18736669 agaaaaaatatggctcaatttctcatatttgtttatgctttgatcatctttctttttccatttctt 18736734  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 22427125 - 22427169
Alignment:
Q  41 atgtttgtttatgcttttatcatctttctatctcaatttcttgtt 85  Q
    |||||| |||||||||| |||||||||||||||| |||| |||||    
T  22427125 atgtttctttatgctttcatcatctttctatctctatttgttgtt 22427169  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 33851548 - 33851620
Alignment:
Q  18 gaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaac 90  Q
    ||||||||||| |||||||||  |||||  |||||| ||| ||||||||||| |||| |||||||||||||||    
T  33851548 gaaaaaatatggctcaaattctcatgttcatttatgttttgatcatctttctttctctatttcttgttgtaac 33851620  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 19898494 - 19898382
Alignment:
Q  10 gcaaaggagaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaa-gtatgtcatt 108  Q
    ||||||||||||||||||| |||||||||   | | |||||||||||| |||||| || | |||| || ||||||||| || | || || ||||||||||    
T  19898494 gcaaaggagaaaaaatatggctcaaattctcttttatgtttatgctttgatcatccttttttctccatctcttgttgt-accactaaaaggtatgtcatt 19898396  T
Q  109 tttcacatcatttt 122  Q
    ||||||| ||||||    
T  19898395 tttcacaccatttt 19898382  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 33407 - 33530
Alignment:
Q  21 aaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttcacatcatt 120  Q
    |||| ||||||||||||   ||||||| ||||| ||| ||||||||||| |||| ||||| ||||| ||| | || | |||||| |||||| ||| ||||    
T  33407 aaaacatgtctcaaattttcatgtttgcttatgttttgatcatctttctttctctatttcatgttgaaacaaatatacgtatgttatttttaacaacatt 33506  T
Q  121 ttctaattttcaaatatatcttat 144  Q
    ||| ||||||| ||| ||| ||||    
T  33507 ttcaaattttctaatttatattat 33530  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 21304550 - 21304480
Alignment:
Q  20 aaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaac 90  Q
    ||||||||| ||||||||| ||  ||| ||||||||||||| ||| ||||||||  |||| ||||||||||    
T  21304550 aaaaatatggctcaaattcttaaatttatttatgcttttataatccttctatctttattttttgttgtaac 21304480  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 26332609 - 26332654
Alignment:
Q  41 atgtttgtttatgcttttatcatctttctatctcaatttcttgttg 86  Q
    ||||||||||||||||| |||| |||||| |||| |||||||||||    
T  26332609 atgtttgtttatgctttgatcaactttctttctctatttcttgttg 26332654  T

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Target: scaffold0512 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 10814 - 10750
Alignment:
Q  10 gcaaaggagaaaaaatatgtctcaaattcgtatgtttgtttatgcttttatcatctttctatctc 74  Q
    ||||||||  ||||||||| |||| ||||  ||||||||||||||||| || |||||||| ||||    
T  10814 gcaaaggaagaaaaatatggctcacattctcatgtttgtttatgctttgattatctttctttctc 10750  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 91723 - 91827
Alignment:
Q  41 atgtttgtttatgcttttatcatctttctatctcaatttcttgttgtaacgagtacaagtatgtcatttttcacatcattttctaattttcaaatatatc 140  Q
    |||||||||  |||||| ||||||||||| |||| |||| | |||| ||| |  | ||||||||| ||||||||| |||||||  |||||| | | ||||    
T  91723 atgtttgttggtgctttgatcatctttctttctctatttttggttgaaaccaaaaaaagtatgtcttttttcacaccattttcatattttctagtttatc 91822  T
Q  141 ttata 145  Q
    |||||    
T  91823 ttata 91827  T

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