View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18396_high_4 (Length: 596)

Name: NF18396_high_4
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18396_high_4
NF18396_high_4
[»] chr2 (35 HSPs)
chr2 (13-452)||(9065362-9065794)
chr2 (19-579)||(8573142-8573700)
chr2 (26-579)||(9060778-9061329)
chr2 (36-581)||(9283831-9284368)
chr2 (27-579)||(10347740-10348278)
chr2 (27-579)||(9315974-9316515)
chr2 (284-571)||(9321168-9321455)
chr2 (30-508)||(10353067-10353537)
chr2 (30-249)||(9328557-9328776)
chr2 (93-494)||(12012274-12012667)
chr2 (284-481)||(9328788-9328985)
chr2 (108-407)||(12005933-12006224)
chr2 (13-225)||(16269030-16269242)
chr2 (27-579)||(7115282-7115832)
chr2 (30-249)||(9320940-9321156)
chr2 (23-226)||(9291894-9292091)
chr2 (28-337)||(12018767-12019074)
chr2 (94-252)||(10335866-10336024)
chr2 (21-243)||(9274470-9274692)
chr2 (259-579)||(9292098-9292415)
chr2 (100-225)||(10371886-10372011)
chr2 (284-490)||(9274707-9274913)
chr2 (106-243)||(9364662-9364799)
chr2 (275-571)||(10336024-10336323)
chr2 (278-407)||(16269272-16269401)
chr2 (28-337)||(11987372-11987673)
chr2 (382-572)||(10372160-10372350)
chr2 (107-192)||(7611974-7612059)
chr2 (107-192)||(17566105-17566190)
chr2 (521-579)||(9357612-9357670)
chr2 (109-179)||(8579522-8579592)
chr2 (172-225)||(8576398-8576451)
chr2 (419-481)||(8579228-8579290)
chr2 (517-571)||(9329024-9329078)
chr2 (27-72)||(10335811-10335856)
[»] scaffold0667 (1 HSPs)
scaffold0667 (13-579)||(4412-4970)
[»] chr1 (6 HSPs)
chr1 (26-579)||(29467433-29467968)
chr1 (30-490)||(29423223-29423666)
chr1 (30-581)||(29442968-29443505)
chr1 (26-494)||(29453041-29453492)
chr1 (526-572)||(29423702-29423748)
chr1 (522-579)||(29452956-29453013)
[»] chr3 (3 HSPs)
chr3 (25-225)||(37462442-37462645)
chr3 (422-579)||(37462828-37462985)
chr3 (26-169)||(39427594-39427740)
[»] chr7 (3 HSPs)
chr7 (29-216)||(45243656-45243843)
chr7 (48-207)||(45230408-45230570)
chr7 (29-181)||(45237907-45238059)
[»] chr4 (3 HSPs)
chr4 (93-225)||(26574882-26575014)
chr4 (382-579)||(26575163-26575360)
chr4 (123-190)||(561273-561340)
[»] chr8 (2 HSPs)
chr8 (21-226)||(41966693-41966898)
chr8 (273-571)||(41966374-41966672)
[»] chr5 (1 HSPs)
chr5 (108-186)||(36224454-36224532)


Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 452
Target Start/End: Complemental strand, 9065794 - 9065362
Alignment:
13 aaaatctcaattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaag 112  Q
    |||| ||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
9065794 aaaacctcaattgcttccaacagaaccttacttccatcaccggaataacctagaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaag 9065695  T
113 taaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
9065694 taaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaatattagtagtttcataattcaaaatcatacaaagacaccctcc 9065595  T
213 caaagcagcaacagtcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctc-attgaaaatttca 311  Q
    |||| ||||||||||||||||||||||||||||        |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
9065594 caaaacagcaacagtcatttgaaaactctcatt--------actattaacctcttcacctcttatttcagcaggaaggggaacctcaattgaaaatttca 9065503  T
312 agtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9065502 agtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgt 9065403  T
412 taacatagtaaagagcgtagggcatagtaggaattattttc 452  Q
    |||||||||||||||||||||||||||||||||||||||||    
9065402 taacatagtaaagagcgtagggcatagtaggaattattttc 9065362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 579
Target Start/End: Complemental strand, 8573700 - 8573142
Alignment:
19 tcaattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaa 118  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | | ||||||| |  |||||| ||||| || ||||||||||    
8573700 tcaattccttccaacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaa 8573601  T
119 gtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagc 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||| |  ||||||||||||||| |||||| |    
8573600 gtttacaccaactatctctagaaccatattctttcatcacccaaacatcaatttcagtggtttcataattcacagacatacaaagacacccacccaaaac 8573501  T
219 agcaacagtcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtga 318  Q
    ||||| |   | || ||||||| ||||||||  ||||| ||||||||||||||| ||| ||||  |||||| |||||||| | |||||||||||||||||    
8573500 agcaagacgaaatttaaaactcccattacta--ttactgttaacctcttcaccttctaattcaacaggaagaggaacctcgtagaaaatttcaagtgtga 8573403  T
319 ggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgttaacata 418  Q
    |||||||||| ||||||||  |||||| | ||| ||| |||||||| | ||| | | |||||| |||||||| ||||||||||||||||   | ||||||    
8573402 ggttaaatgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacata 8573303  T
419 gtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagact 518  Q
     | ||||||||| ||| || | |||||| ||||||| |||||||||||  |||| |||||| |  ||||||||||||||||| |||| || | || ||||    
8573302 ttgaagagcgtatggcgtactgggaattgttttccacgagtttgttttcaagctaaagagtgtgacatgtgaatcataaaaagggttatgttgagtgact 8573203  T
519 aaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
    ||||||||||||| |||||| ||||||||  |||||||| |||||||||||||| ||||||    
8573202 aaccaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 26 - 579
Target Start/End: Complemental strand, 9061329 - 9060778
Alignment:
26 cttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttaca 125  Q
    ||||||||| |||||||| ||||||||| ||||||| ||| |||||| ||     |||| |||||| |||||| ||||| ||||||||||||||||||||    
9061329 cttccaacagaaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaaaagtttaca 9061230  T
126 ccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaaca 225  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| |  ||| ||||||||||| |||||| ||||||||    
9061229 ccaactatctctagatccatagtctttcatcacccaaacatcaattttagtagcttcataattcacagacatgcaaagacacccacccaaaacagcaaca 9061130  T
226 gtcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaa 325  Q
       |||| ||||||| ||||||||  ||||| ||||||||||||||| ||| ||||   ||||| |||||||||||||||||||||||||||||||||||    
9061129 cgaattttaaaactcccattacta--ttactgttaacctcttcaccttctaattcaacgggaagaggaacctcattgaaaatttcaagtgtgaggttaaa 9061032  T
326 tgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaaaga 425  Q
    ||| ||||||||  |||||| | ||| ||| |||||||| | ||| | | |||||| |||||||| ||||||||||||||||   | |||||| | ||||    
9061031 tgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaaga 9060932  T
426 gcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaag 525  Q
    ||||| |||||| | |||||| ||||||| |||||||||||  |||| ||||| ||  |||||||||||||||||  ||||||   ||  | ||||||||    
9060931 gcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaataaccaag 9060832  T
526 agattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
     |||||||||||| ||||||||  |||| |||||||||||||||||| ||||||    
9060831 tgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaa 9060778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 36 - 581
Target Start/End: Complemental strand, 9284368 - 9283831
Alignment:
36 aaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaactatct 135  Q
    ||||||||| |||||||| |||||||||||||||||| ||| | ||||| || ||  ||| |  ||||| ||||||||||||| ||||||||||||||||    
9284368 aaccttactaccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaaccaaagtaaaaattttacaccaactatct 9284269  T
136 ctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaacagtcatttgaa 235  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||| |||||| ||||| ||| |||||||    |  | ||    
9284268 ctagaaccatattctttcatcacccaaacgtcaattttagtagtttgataattcacaatcatactaagacaacctcctaaaacagcaacctcaaggtcaa 9284169  T
236 aactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgcaacaatt 335  Q
    |||||| |||| || ||        ||||| ||||||| |||  ||| |||||| |||||||| |||||||  || ||||| |||||||| || ||||||    
9284168 aactctgattattattt--------acctcctcacctcttataacagcaggaagaggaacctctttgaaaacctctagtgttaggttaaacgcgacaatt 9284077  T
336 aaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggca 435  Q
    ||| || | | | ||| ||| || |||||   ||||||| ||||||||||||||||||||||||||||||||   | | ||||||||| || ||||||||    
9284076 aaacaaaggtctgacccatcaagattcttttccattatccagtgaatagaattctcaacaaaaacccccatggcttgagcatagtaaacagtgtagggca 9283977  T
436 tagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgag 535  Q
    || |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||  ||||||   ||| |||| ||||||||||| |||    
9283976 taataggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtagagatactagccaagagattcggag 9283877  T
536 gagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaatg 581  Q
    ||| |||||||| |||||||| ||||||||||||||| ||||||||    
9283876 gagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatg 9283831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 27 - 579
Target Start/End: Original strand, 10347740 - 10348278
Alignment:
27 ttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacac 126  Q
    |||||||| |||||||||||||||||| ||||||| ||  |||||| |   | ||||| || ||| |||||| || |   ||| ||||||||||||||||    
10347740 ttccaacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacac 10347839  T
127 caactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaacag 226  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||||||||  || |||||  | | | ||||||||||||||||||||| ||||||||     
10347840 caactatctctacatccatattctttcatgacccaaacatcaattttagtatctttataatcgacagtgatacaaagacaccctcccaaaacagcaacat 10347939  T
227 tcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaat 326  Q
      | || ||||||||||           | |||||| |||||||||   ||||||  |||||| |||||||||||||||||||||||||||||||||||     
10347940 gaacttcaaaactctca-----------ccattaacttcttcacct---atttcatcaggaagaggaacctcattgaaaatttcaagtgtgaggttaaac 10348025  T
327 gcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaaagag 426  Q
    || |||||||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||||||||||||||||    ||  | ||  | ||||     
10348026 gcgacaattaaagaaggatgtaacccatcaagtttcttcgtcataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgttgaagat 10348125  T
427 cgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaaga 526  Q
    |||| ||||||| ||||||||| ||||| |||||||||||  |||||||||||||  | |||| |||||||||| |||| ||   |  || |||   |||    
10348126 cgtacggcatagcaggaattatcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagtaagtgaga 10348225  T
527 gattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
     ||||||||||| ||||||||||||| || | |||||||||||||| ||||||    
10348226 aattctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaa 10348278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 27 - 579
Target Start/End: Original strand, 9315974 - 9316515
Alignment:
27 ttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacac 126  Q
    |||||| | |||||||||||| ||||| ||||||||||||||| || ||    |||||  | ||  |||||| || || |||||||||||||||||||||    
9315974 ttccaatagaaccttacttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaattaaccaaagtaaaaagtttacac 9316073  T
127 caactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaacag 226  Q
    ||||||      |||||||| ||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
9316074 caacta------gatccatagtctttcatcacccaaacatcagttttagtagtttgataattcaaaatcatacaaagacaccctcccaaaacagcaacag 9316167  T
227 tcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaat 326  Q
      |||||||||||||||      | | |||||||||||||  || | ||||||||| |||||| |||||| |||||||||| |||||||| ||||||||     
9316168 caatttgaaaactctca-----cactcactattaacctctatactttctatttcagcaggaagaggaaccacattgaaaatctcaagtgttaggttaaac 9316262  T
327 gcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaaagag 426  Q
    || ||||| ||| |||| ||| ||   ||   || ||  ||||||| | |||||| |||||||| ||||||||||||||||   | |||||| | |||||    
9316263 gcgacaatgaaacaagggtgtgactcttcactttgctgagtcattacccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagag 9316362  T
427 cgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaaga 526  Q
    |||| |||||| | |||||| ||||||| |||||||||||  |||| ||||| ||  |||||||||||||||||  |   ||| ||  | | | ||||||    
9316363 cgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaagagcaatgaccatcggccatccaaga 9316462  T
527 gattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
     ||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||    
9316463 aattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaa 9316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 284 - 571
Target Start/End: Original strand, 9321168 - 9321455
Alignment:
284 aggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaata 383  Q
    |||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | | | |||||||| ||||||||| |||||| |    
9321168 aggaagaggaaccacattgaaaatttcaagtgttaggttaaatgcaacaattaaagaaggatgtaatccaccaagtttctttgtcattatccagtgaaga 9321267  T
384 gaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctag 483  Q
    ||||||||||||||||||||||||   | | |||||  ||||| ||| |||||| | |||||||||||||| ||||||||| | ||||||||||||||      
9321268 gaattctcaacaaaaacccccatgaattgagcatagataagagagtacggcatactgggaattattttccacgagtttgttatagagctgaagagtctga 9321367  T
484 catgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaa 571  Q
    |||||||||||||||||  ||| ||   |||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||    
9321368 catgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaa 9321455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 30 - 508
Target Start/End: Original strand, 10353067 - 10353537
Alignment:
30 caacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 129  Q
    ||||| ||||||  ||| |||||| |||||||||||| ||||| ||| |  |||| || ||| |||| ||||||| |||| |||||||||||||||||||    
10353067 caacaaaaccttttttctatcactcgaataacctaaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaa 10353166  T
130 ctatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaacagtca 229  Q
    || |||||| ||||||||||||||||||||||| ||||||||||||||  || ||||| || ||||||||||||||||||||| ||||||||||||   |    
10353167 ctctctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccacaatcatacaaagacaccctcctaaagcagcaacacgaa 10353266  T
230 tttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgca 329  Q
    ||| |||||||           ||||||||||| ||||  ||| ||||||||  |||||| ||||||||||||||| | |||||||| |||||||| ||     
10353267 ttttaaaactc-----------ttactattaacttctt--cct-ctatttcatcaggaagaggaacctcattgaaagtctcaagtgttaggttaaacgcg 10353352  T
330 acaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaa------tagaattctcaacaaaaacccccatgctgttaa--catagta 421  Q
    | |||||||  ||| || ||| | |  | |||| |||||  || | ||||||      |||||||||||||||||||||||||  ||||||  |||||||    
10353353 agaattaaatcaggttgaaacagttgaactttcctcgtcgctacccagtgaagagaactagaattctcaacaaaaacccccat--tgttaaagcatagta 10353450  T
422 aagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttg 508  Q
    |||||  || |||| | ||||||||| |||||| |||||||||||  |||||||||||||  |||||| |||||||||| |||||||    
10353451 aagagaataaggcaaattaggaattactttccatgagtttgttttcaagctgaagagtctgacatgtggatcataaaaagggttttg 10353537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 9328557 - 9328776
Alignment:
30 caacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 129  Q
    ||||| ||||||  ||||||||||  ||||||||||||||||| ||| | ||||| || |||||||||| ||||| |||| |||||||||||||||||||    
9328557 caacaaaaccttttttccatcactcaaataacctaaaggcctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaa 9328656  T
130 ctatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaacagtca 229  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||||| || |||||   |    
9328657 ctatctctatatccatattgtttcatcacccaaacatcaatttcagtagtttcataattcaaagtcatgcaaagacaccctcccaaaacatcaacatcaa 9328756  T
230 tttgaaaactctcattacta 249  Q
    ||| |||||||| |||||||    
9328757 tttcaaaactcttattacta 9328776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 93 - 494
Target Start/End: Complemental strand, 12012667 - 12012274
Alignment:
93 gaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaa 192  Q
    |||||| ||||  |||||||||||||||||||||||||||||| || | |||||||||||||||||| |  ||||||| |||||||||| || ||||| |    
12012667 gaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcaca 12012568  T
193 atcatacaaagacaccctcccaaagcagcaacagtcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaagggg 292  Q
    |||||||||||||||||||||||| |||||||||  |||| |||||      |||||  |||| | ||||||||||||||| |||||||  |||||  ||    
12012567 atcatacaaagacaccctcccaaatcagcaacagaaatttcaaaac------tacta--ttacaaataacctcttcacctcatatttcatcaggaaatgg 12012476  T
293 aacctcattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctca 392  Q
    ||||||||||||||  |||||||| |||||||| || |||||||||   |||||||||| |||  | ||||||  | ||||| | |||| ||||||||||    
12012475 aacctcattgaaaagctcaagtgttaggttaaacgcgacaattaaacggggatgtaacccatcaggattcttcaccgttatccaatgaagagaattctca 12012376  T
393 acaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaat 492  Q
    |||||||| |||||| |   | ||||| ||||| | |||   ||| |||||| || |||||| ||||||||||| ||| ||||||||||  ||| |||||    
12012375 acaaaaactcccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcgaggtgaagagtctgacatatgaat 12012276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 284 - 481
Target Start/End: Original strand, 9328788 - 9328985
Alignment:
284 aggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaata 383  Q
    |||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| | | | |||||||| ||||||||| |||||| |    
9328788 aggaagaggaaccacattgaaaatttcaagtgttaggttaaacgcaacaattaaagaaggatgtaatccaccaagtttcttagtcattatccagtgaaga 9328887  T
384 gaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtct 481  Q
    ||||||||||| ||||||||| || | | | |||||  ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||    
9328888 gaattctcaaccaaaacccccgtgttttgagcatagacaagagcgtagggcatagcaggaattattttccaagagtttgttttagagttgaagagtct 9328985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 108 - 407
Target Start/End: Complemental strand, 12006224 - 12005933
Alignment:
108 caaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacac 207  Q
    |||||||||||||||||||||||||||| || | ||||||||||||||||||||  ||||||| |||||||||| |||||||| ||||| ||||||||||    
12006224 caaagtaaaaagtttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtttgataattcacaatcaaacaaagacac 12006125  T
208 cctcccaaagcagcaacagtcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaat 307  Q
    ||||||||| |||||||| | |||| |||||||  ||||| ||        ||||||||||||||| |||||||  |||||  |||||||| |||||||     
12006124 cctcccaaatcagcaacattaatttcaaaactccgattacaaa--------taacctcttcacctcttatttcatcaggaaaaggaacctcgttgaaaac 12006033  T
308 ttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatg 407  Q
     |||||||| |||||||| || | |||||||    ||||||||| |||  |||||||   ||| ||| |||||| |||||||||||||||||||||||||    
12006032 ctcaagtgttaggttaaacgcgaaaattaaacgctgatgtaacccatcaggtttcttgaccatcatccagtgaagagaattctcaacaaaaacccccatg 12005933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 16269030 - 16269242
Alignment:
13 aaaatctcaattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaag 112  Q
    |||| |||||||||||| || | |||||||||||||||||| |||||||||| |||  | |||  |  ||||||||||  |||||| ||||| ||||| |    
16269030 aaaacctcaattccttcaaagagaaccttacttccatcactagaataacctataggatttgaatatcgcaaatgtgaagtgaaacacgatttaaccaagg 16269129  T
113 taaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcc 212  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||| |||||    
16269130 taaaaagtttgcaccaactatctctatatccatactctttcatcacccaaacatcaattttagtagtttcataattcacagttatacaaagacatcctcc 16269229  T
213 caaagcagcaaca 225  Q
    |||| ||||||||    
16269230 caaaacagcaaca 16269242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 27 - 579
Target Start/End: Complemental strand, 7115832 - 7115282
Alignment:
27 ttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagc-tgt---caaatgtgaatggaaacaagatttgaccaaagtaaaaagttt 122  Q
    |||||| | |||||| ||||||||||| ||||||||||||||||| ||| | |||   ||||  | ||| |||||| || || ||||| |||||||||||    
7115832 ttccaatagaaccttgcttccatcactagaataacctaaaggcct-gaaccatgtaatcaaagataaatcgaaacacgaattaaccaatgtaaaaagttt 7115734  T
123 acaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagca 222  Q
    |||||| || |||||||||||||||| ||||||||||||| ||||  |||||||||||  |||||||| ||||||||||||||||||||||||| |||||    
7115733 acaccagctgtctctagatccatattgtttcatcacccaaacatctgttttagtagttctataattcacaatcatacaaagacaccctcccaaaacagca 7115634  T
223 acagtcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggtt 322  Q
    | ||  | || || ||   |||||| |  | ||| ||||| | ||||||||||| ||||  |||||| ||||||||| |||||   |||||||| |||||    
7115633 atagaaagttcaatac---cattacca--tcactgttaactttttcacctcctaattcatcaggaagaggaacctcaatgaaacgctcaagtgttaggtt 7115539  T
323 aaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaa 422  Q
    ||| || ||||||||| |||| ||| ||  ||| ||||||   | ||||||| |||||| |||| |    |||||||||||  || | | || ||||| |    
7115538 aaacgcgacaattaaacaagggtgtgactcatcaagtttccgagacattatccagtgaacagaagtaaatacaaaaaccccattggtttcaaaatagtga 7115439  T
423 agagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaacc 522  Q
     || | || |||||   |||||| |||||||| |||||||||||  | |||||||||||    |||||||||||||||  |||| |   |  |  |||||    
7115438 ggaacatacggcattacaggaatcattttccacgagtttgttttcaaactgaagagtctgatctgtgaatcataaaaagagtttggtggattgcataacc 7115339  T
523 aagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
    ||||||||||||| || ||||||||| | ||||| ||||||||||||||| ||||||    
7115338 aagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaa 7115282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 9320940 - 9321156
Alignment:
30 caacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 129  Q
    ||||| ||||||  |||||||||| |||||||||||||||||| ||| | ||||| || ||| | |||| ||||| |||| |||||||||||||||||||    
9320940 caacaaaaccttttttccatcactcgaataacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaa 9321039  T
130 ctatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaacagtca 229  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||| |||||||| ||||   || |||| |||||||||||||||||| || |||||   |    
9321040 ctatctctagaaccatattctttcatcacccaaacatcaacttttgtagtttcgtaat---aagtcatgcaaagacaccctcccaaaacatcaacatcaa 9321136  T
230 tttgaaaactctcattacta 249  Q
    ||| ||||||||||||||||    
9321137 tttcaaaactctcattacta 9321156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 9291894 - 9292091
Alignment:
23 ttccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagttt 122  Q
    |||| ||||||| ||||||||||||||| || ||||||| |||||||||| ||| | ||||| |||||  |      ||||| |||||||||||||||||    
9291894 ttccgtccaacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaa-gtgaaccgc-----gatttaaccaaagtaaaaagttt 9291987  T
123 acaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagca 222  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| ||| |||||    
9291988 acaccaactatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacactctcctaaaacagca 9292087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 28 - 337
Target Start/End: Complemental strand, 12019074 - 12018767
Alignment:
28 tccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacacc 127  Q
    ||||||| ||||||  |||||||||| |||||||||||||| ||| ||  | | ||| || ||  |||||| ||||  | ||||||||||||||||||||    
12019074 tccaacaaaaccttttttccatcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaacacgattccatcaaagtaaaaagtttacacc 12018975  T
128 aactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcat------aattcaaaatcatacaaagacaccctcccaaagcagc 221  Q
    ||||||||||| ||||||||||||||||||||||| || | || |||||| ||| ||      |||||| ||||| ||||||||||||||||||| ||||    
12018974 aactatctctacatccatattctttcatcacccaaacacctatcttagtaatttgatttcgataattcataatcaaacaaagacaccctcccaaatcagc 12018875  T
222 aacagtcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggt 321  Q
    |||||  |||||||||||        ||   | |||||||||| || ||||||||||| || |||||| ||||||||||||||||| || ||||||||||    
12018874 aacagcaatttgaaaact--------tatactcctattaacctttttacctcctattttagtaggaagaggaacctcattgaaaatatcgagtgtgaggt 12018783  T
322 taaatgcaacaattaa 337  Q
    ||||||| ||||||||    
12018782 taaatgcgacaattaa 12018767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 94 - 252
Target Start/End: Original strand, 10335866 - 10336024
Alignment:
94 aaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaa 193  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |||||||| |     
10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctttcatcacccaaacatcaattttagtagtttgataattcacag 10335965  T
194 tcatacaaagacaccctcccaaagcagcaacagtcatttgaaaactctcattactaatt 252  Q
     || ||||||||||||||||||| |||||| ||  |||| |||||||||||||||||||    
10335966 gcaaacaaagacaccctcccaaaacagcaatagaaattttaaaactctcattactaatt 10336024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 9274470 - 9274692
Alignment:
21 aattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagt 120  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||||  ||  |  ||||| |  | ||||||||| ||  | |||||||||||||    
9274470 aattccttccaacagaaccttacttccatcactagaataacataaaggcctaaaaatttccaaatctacaaggaaacaaggttccatcaaagtaaaaagt 9274569  T
121 ttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcag 220  Q
    ||||||||||||||| |||| ||||||||||||||||||||| | |||| || |||| ||  |||||||||| ||||||||||||||||| ||||| ||     
9274570 ttacaccaactatctgtagaaccatattctttcatcacccaaacttcaaattcagtatttcgataattcaaagtcatacaaagacacccttccaaaacaa 9274669  T
221 caacagtcatttgaaaactctca 243  Q
    ||||| | |||| ||||||||||    
9274670 caacattaatttcaaaactctca 9274692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 259 - 579
Target Start/End: Original strand, 9292098 - 9292415
Alignment:
259 taacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctag 358  Q
    |||||||||||||| ||||||||| |||||  |||||| |||||||| | |||||||| |||||||| || ||||| ||| |||| ||| ||  | | |     
9292098 taacctcttcaccttctatttcagcaggaaaaggaaccacattgaaagtctcaagtgttaggttaaaagcgacaatgaaacaagggtgtgactcaacaat 9292197  T
359 tttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccat-gctgttaacatagtaaagagcgtagggcatagtaggaattattttccaaga 457  Q
    | ||   ||||||| | |||| |||||||||| ||||||||||||||| ||| | |||||| | ||||||||| |||||| ||||||| |||||||| ||    
9292198 tgtccgagtcattacccagtggatagaattctgaacaaaaacccccatagct-tgaacatattgaagagcgtacggcatactaggaatgattttccacga 9292296  T
458 gtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaat 557  Q
    ||| ||||||||||||||||||||  | |||| |||| || | |  | | | ||   | ||| |||||||||||||||||| |||||||| |||||||||    
9292297 gttagttttggagctgaagagtctcacctgtggatcaaaagagtaatgtaggtc---ggctatccaagagattctgaggagtttgtaatcgccggttaat 9292393  T
558 ggatcaaaaccgaagtcgtgaa 579  Q
    |||||| |||||||| ||||||    
9292394 ggatcataaccgaagccgtgaa 9292415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 10371886 - 10372011
Alignment:
100 gatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatac 199  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||  |||||||||| ||||| || | ||||||    
10371886 gatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatac 10371985  T
200 aaagacaccctcccaaagcagcaaca 225  Q
    ||||||||||||| ||| ||||||||    
10371986 aaagacaccctcctaaaacagcaaca 10372011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 284 - 490
Target Start/End: Original strand, 9274707 - 9274913
Alignment:
284 aggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaata 383  Q
    |||||| |||||| |||||||||| |||||||| |||||||| |||||||||||| |||| ||| ||  ||| | || | | ||||||| | |||||| |    
9274707 aggaagaggaaccacattgaaaatatcaagtgttaggttaaacgcaacaattaaacaagggtgtgactcatcaatttccctagtcattacccagtgaaga 9274806  T
384 gaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctag 483  Q
    |||||||||||||||| |||||||   | |||||| | ||||||||| |||||| | |||||||||||||| |||||||||||  |||||||||||||      
9274807 gaattctcaacaaaaatccccatggcttgaacatatttaagagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctca 9274906  T
484 catgtga 490  Q
    |||||||    
9274907 catgtga 9274913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 9364662 - 9364799
Alignment:
106 accaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagac 205  Q
    ||||||||||| | |||||||||||||||| |  ||||||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||| |||||    
9364662 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcatactaagac 9364761  T
206 accctcccaaagcagcaacagtcatttgaaaactctca 243  Q
    ||||||||||| | ||||||   |||| ||||||||||    
9364762 accctcccaaaaccgcaacatcgatttcaaaactctca 9364799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 275 - 571
Target Start/End: Original strand, 10336024 - 10336323
Alignment:
275 tatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatc 374  Q
    |||||||  |||||| ||||||||||||||||| |||||||  || ||||| ||| |||||||| |||| ||||||| ||| ||||||   |||||||||    
10336024 tatttcatcaggaagaggaacctcattgaaaatctcaagtgatagattaaacgcagcaattaaacaaggttgtaacccatcaagtttcggagtcattatc 10336123  T
375 aagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctga 474  Q
     |||||| |||||||||||||||||| |||||| |   |  ||||||||||   || ||||||   |||| | ||||||||||||||||||| |||||||    
10336124 cagtgaagagaattctcaacaaaaacacccatggttagagtatagtaaagaatatacggcatatccggaagtgttttccaagagtttgttttcgagctga 10336223  T
475 agagtctagcatgtgaatcataaaa---atggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaa 571  Q
    ||||| |   |||||||| || |||   ||||| |||   |  ||| |||||||||||||||||||| ||||||||  ||| ||||| ||||||||||||    
10336224 agagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaa 10336323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 278 - 407
Target Start/End: Original strand, 16269272 - 16269401
Alignment:
278 ttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaag 377  Q
    ||||| |||||| |||||||| |||||||| |||||||| |||||||| || || |||||||||||||||||||  || |||||||||| ||||||  ||    
16269272 ttcagcaggaagaggaacctcgttgaaaatctcaagtgttaggttaaacgcgacgattaaagaaggatgtaacccgtcaagtttcttcgccattatacag 16269371  T
378 tgaatagaattctcaacaaaaacccccatg 407  Q
     |||||||||||||||||||||||||||||    
16269372 cgaatagaattctcaacaaaaacccccatg 16269401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 28 - 337
Target Start/End: Complemental strand, 11987673 - 11987372
Alignment:
28 tccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacacc 127  Q
    ||||||| ||||||  | |||||||| |||||||| ||||| ||| ||| | ||||| || ||  |||||| ||||  | ||| || |||||||||||||    
11987673 tccaacaaaacctttttaccatcactcgaataacccaaagggctcaaagatttcaaaggtaaaacgaaacacgattccatcaatgtgaaaagtttacacc 11987574  T
128 aactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaacagt 227  Q
    ||||||||||| |||||||||||||||||||||||  |||||| ||||||   | || ||||| | ||| ||||||||||||||||||| ||||||||      
11987573 aactatctctacatccatattctttcatcacccaaatatcaatcttagta---tgatgattcacagtcaaacaaagacaccctcccaaaacagcaacatc 11987477  T
228 catttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaatg 327  Q
     |||| ||||||  || || || |   || || ||||     |||||||||||| ||||||  ||||||||||||||||  || ||||| ||||||||||    
11987476 aatttcaaaacttgcactattagtaacctcttcacct-----cctcctatttcatgaggaaaaggaacctcattgaaaacctcgagtgttaggttaaatg 11987382  T
328 caacaattaa 337  Q
    | ||||||||    
11987381 cgacaattaa 11987372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 382 - 572
Target Start/End: Original strand, 10372160 - 10372350
Alignment:
382 tagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtct 481  Q
    ||||||| |||||||||||||||||| ||| |  ||| | |||| |||| ||||||||||||||||| ||||| ||||| | |||||||||||||||||     
10372160 tagaattgtcaacaaaaacccccatggtgtgataatactgaagaacgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcg 10372259  T
482 agcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaag 572  Q
    | |||||| ||||||||||  | |||| |    || |||  |||||||||||||||| |||| ||| |||| ||| | |||||||||||||    
10372260 aacatgtggatcataaaaagtgctttggtggtcgattaagtaagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaag 10372350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 7611974 - 7612059
Alignment:
107 ccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaa 192  Q
    |||||||||| | |||||||||||||||| |  ||||||||||||||||||||||| ||||||  ||| |||||||||||||||||    
7611974 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaaacttaatagtttcataattcaaa 7612059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 17566190 - 17566105
Alignment:
107 ccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaa 192  Q
    |||| ||||| | |||||||||| |||||||| ||||||||||||| ||||||||| ||||||  |||||||||| ||||||||||    
17566190 ccaaggtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaacattagtagtttgataattcaaa 17566105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 9357612 - 9357670
Alignment:
521 ccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||    
9357612 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 9357670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 8579592 - 8579522
Alignment:
109 aaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagt 179  Q
    |||||||| | ||||||||||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
8579592 aaagtaaacaatttacaccaactatctctaaatccatattttttcatcacccaaacctcaaccttagtagt 8579522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 8576451 - 8576398
Alignment:
172 ttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaaca 225  Q
    ||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||    
8576451 ttagtagtttcataattcacactcatacaaagacaccctccaaaaacagcaaca 8576398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 481
Target Start/End: Complemental strand, 8579290 - 8579228
Alignment:
419 gtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtct 481  Q
    |||||||||||| || ||| |||||| |  |||||| ||||||||||||||||||||||||||    
8579290 gtaaagagcgtacgggatattaggaagtgctttccacgagtttgttttggagctgaagagtct 8579228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 517 - 571
Target Start/End: Original strand, 9329024 - 9329078
Alignment:
517 ctaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaa 571  Q
    ||| ||||| |||||||||||| ||||||||||||| ||| ||||||||||||||    
9329024 ctatccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaa 9329078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 10335811 - 10335856
Alignment:
27 ttccaacacaaccttacttccatcactggaataacctaaaggcctc 72  Q
    |||||| | ||||||||||||||||||  |||||||||||||||||    
10335811 ttccaatagaaccttacttccatcactacaataacctaaaggcctc 10335856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 13 - 579
Target Start/End: Original strand, 4412 - 4970
Alignment:
13 aaaatctcaattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaag 112  Q
    |||| |||||||||||| | || |||||||||||||||||| ||||||| |||||| ||||||| | |||||||||||  || ||| ||||| | || ||    
4412 aaaacctcaattccttcaatcagaaccttacttccatcactagaataacataaaggactcgaagatttcaaatgtgaagtgacacacgatttcatcatag 4511  T
113 taaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcc 212  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||||    
4512 taaaaagtttacaccaactatcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcctcc 4611  T
213 caaagcagcaacagtcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaa 312  Q
    |||||||||||||   |||| || ||| |||||      | |  ||||||||||||  | ||||||||   |||||| ||||||||||||||||||||||    
4612 caaagcagcaacatcaatttcaacactgtcatt------tga--attaacctcttcttcacctatttcgtcaggaagaggaacctcattgaaaatttcaa 4703  T
313 gtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgtt 412  Q
    |||| |||||||| || ||||||| |||||||||||||| ||| |||||||| | ||||||| |||||||||||| |||||| |||||||||||| | |     
4704 gtgttaggttaaaagcgacaattagagaaggatgtaacccatcaagtttctttgccattatccagtgaatagaatcctcaaccaaaacccccatggtttg 4803  T
413 aacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatca 512  Q
    | || ||  ||| ||||| ||||||||||||||||||||||| ||||| |||||  |||| ||||||||| |||||| |||||||||| |||||||   |    
4804 agcaaagacaagggcgtacggcatagtaggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtaga 4903  T
513 gagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
    |||||||||||||||| ||||||||  |||||||| |||||||| ||||||||||||||| ||||||    
4904 gagactaaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 4970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 26 - 579
Target Start/End: Complemental strand, 29467968 - 29467433
Alignment:
26 cttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttaca 125  Q
    |||| |||| |||| |||||||||| || |||||||||||||||||| ||| |  ||| ||| ||  |||||| ||| | |||||||||||||||||||     
29467968 cttcaaacagaaccatacttccatcgctcgaataacctaaaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaaaagtttacg 29467869  T
126 ccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaaca 225  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||| |||||||| |||||   ||||||||||||||||| | ||||||    
29467868 ccaactatctctacatccatattctttcatcaaccaaacatcaattttactagtttgataattcacaatcaactaaagacaccctcccaaaaccgcaaca 29467769  T
226 gtcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaa 325  Q
       |||| ||||||||||  ||         |||||   |||||   ||||||||   |||||| ||||||||||||||||| |||||  | ||||||||    
29467768 tcaattttaaaactctca--ac---------attaa---cttcataacctatttc---aggaagaggaacctcattgaaaatctcaagctttaggttaaa 29467686  T
326 tgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaaaga 425  Q
     || | ||||||| |||  ||||||| ||| ||||||||| |||||||| | |||| ||||||||||||||||||| ||||| | | |  ||||||||||    
29467685 cgcgataattaaacaagattgtaacccatcaagtttcttcttcattatccaatgaagagaattctcaacaaaaaccaccatggtttgaggatagtaaaga 29467586  T
426 gcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaag 525  Q
    | ||| |||||| ||| || || |||||| ||||| ||||| |||||||||||| || |||||||||||| |   ||||  ||      ||| || ||||    
29467585 gagtacggcatactagaaagtactttccaggagttcgttttcgagctgaagagtgtaacatgtgaatcatgagtgtggtggtgtagtttgacgaaacaag 29467486  T
526 agattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||    
29467485 agattctga-gagtttgtaatcatcggttaatggatcaaaaccgaagccgtgaa 29467433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 30 - 490
Target Start/End: Original strand, 29423223 - 29423666
Alignment:
30 caacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 129  Q
    ||||| |||| ||| |||||| || |||||| ||||| ||||| ||||| ||||| || |   |||||| ||||   ||||||||||||||||||||||     
29423223 caacagaaccatacctccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccag 29423322  T
130 ctatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaacagtca 229  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||  ||||| |||||||| | |||||||||| |||||| ||| | | ||||||   |    
29423323 ctatctctacatccatattctttcatcagccaaacatcaattttaacagtttgataattcacagtcatacaaaggcacccttccagaaccgcaacaccaa 29423422  T
230 tttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgca 329  Q
    ||| ||||||||||           ||||| || ||||||||    |||||||||  |   ||||||||||||||||| ||| |||| |||||||| |||    
29423423 tttcaaaactctca-----------ctattcacttcttcacca---atttcaggaaaa---ggaacctcattgaaaatctcatgtgttaggttaaacgca 29423505  T
330 acaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgt 429  Q
    ||||||| |  ||| |  ||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||  | | | |||||||||||| ||    
29423506 acaattacacgaggtttcaacggatcaagtttctccgtcattatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgt 29423605  T
430 agggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtga 490  Q
    | ||||| ||||||| |  |||||| ||||||||||| |||||||||||||| ||||||||    
29423606 aaggcatggtaggaagttctttccacgagtttgttttcgagctgaagagtctcgcatgtga 29423666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 30 - 581
Target Start/End: Complemental strand, 29443505 - 29442968
Alignment:
30 caacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaa 129  Q
    ||||| |||| |||||| ||| || ||||||||||||  |||| ||||| ||||| || ||  |||||| ||||   ||||||||||||||||||||||     
29443505 caacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccag 29443406  T
130 ctatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaacagtca 229  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||||| ||| | | | || |   |    
29443405 ctatctctacatccatattctttcatcacccaaacatcaattttagcagtttgataattcacaatcatacaaagacacccttccagaaccgaaataccaa 29443306  T
230 tttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgca 329  Q
    |||||||||||||           ||||||||| ||||||   ||||||||   |||||  ||||||||||||||||| || ||||| |||||||| ||     
29443305 tttgaaaactctc-----------actattaacatcttca---cctatttc---aggaaaaggaacctcattgaaaatctcgagtgttaggttaaacgcg 29443223  T
330 acaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaaccccca-tgctgtt--aacatagtaaagag 426  Q
    ||||||  |  ||| || ||| |||| ||||||   ||||||| | ||||||  ||||||||||||||| |||||| || | ||  | ||||| ||||||    
29443222 acaattgcacgaggttgcaacagatcaagtttccgagtcattacccagtgaagggaattctcaacaaaatcccccattgttcttcgagcataggaaagag 29443123  T
427 cgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaaga 526  Q
     ||| ||||||||||||| |  |||||| |||||||||||| |||||||||||||| ||||||| ||| ||  |  || |||  |    || || |||||    
29443122 tgtaaggcatagtaggaagttctttccacgagtttgttttgaagctgaagagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaaga 29443023  T
527 gattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaatg 581  Q
    |||||||| ||| ||||||||   ||| |||||||||||||||||| ||||||||    
29443022 gattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaatg 29442968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 26 - 494
Target Start/End: Complemental strand, 29453492 - 29453041
Alignment:
26 cttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttaca 125  Q
    ||||||||| |||| |||||||||| || |||||| ||||||||| | ||| | ||||| || ||  |||||| ||||   ||||||||||||||| |||    
29453492 cttccaacagaaccatacttccatcgctcgaataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttcaca 29453393  T
126 ccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcagcaaca 225  Q
    ||| ||||||||| ||||||||||||||||||||||| |||||||||||  ||||| |||||||| ||||||||||||||||||| ||||| | ||||||    
29453392 ccagctatctctacatccatattctttcatcacccaaacatcaattttaacagtttgataattcacaatcatacaaagacacccttccaaaaccgcaaca 29453293  T
226 gtcatttgaaaactctcattactaatttactattaacctcttcacctcctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaa 325  Q
       |||| |||||||||           |||||| || ||||||   ||||||||   |||||  ||||||||||||||||| ||  |||| ||||||||    
29453292 ccaatttcaaaactctc-----------actattcacttcttca---cctatttc---aggaaaaggaacctcattgaaaatctcgtgtgttaggttaaa 29453210  T
326 tgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaacccccatgctgtt--aacatagtaaa 423  Q
     |||||||||| |  ||  || ||| || | ||||||   ||||||||| |||||| ||||||||||||||||||||||   |||||  |  |||| |||    
29453209 cgcaacaattacacgagattgcaactgaccaagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccc--tctgttcgaggataggaaa 29453112  T
424 gagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatca 494  Q
    ||||||| |||||| ||||||    |||||| |||||  |||| ||||||||||||||  |||||||||||    
29453111 gagcgtacggcatactaggaaggtctttccacgagttcattttcgagctgaagagtctcacatgtgaatca 29453041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 526 - 572
Target Start/End: Original strand, 29423702 - 29423748
Alignment:
526 agattctgaggagcttgtaatcaccggttaatggatcaaaaccgaag 572  Q
    ||||| ||||||| ||||||||| | |||||||||||||||||||||    
29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaag 29423748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 579
Target Start/End: Complemental strand, 29453013 - 29452956
Alignment:
522 caagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
    ||||||||||||||||| ||||||||  || |||| ||||||||||| ||| ||||||    
29453013 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaa 29452956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 37462442 - 37462645
Alignment:
25 ccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttac 124  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||| ||| | ||||| |||||  |||||| |||||  ||| |||| |||||||||    
37462442 ccttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttac 37462541  T
125 accaactatctctagatccatattctttcatcacccaaccatcaattttagtag---tttcataattcaaaatcatacaaagacaccctcccaaagcagc 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||   ||| |||||||| | ||||||||||||| ||||||||| ||||    
37462542 accaactatctctagatccatattctttcatcacccaaacatcaaatttagtagtttttttataattcacagtcatacaaagacagcctcccaaaacagc 37462641  T
222 aaca 225  Q
    ||||    
37462642 aaca 37462645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 422 - 579
Target Start/End: Original strand, 37462828 - 37462985
Alignment:
422 aagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaac 521  Q
    ||||| |||||| | | |||||| ||||||||| ||||||||||||||||||||||||||  |||||| |||||||||| |||||||   |  ||  | |    
37462828 aagagagtagggaaaactaggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagc 37462927  T
522 caagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
    ||||||||||||||||| |||||||| |||||||| | ||||||||||||| ||||||    
37462928 caagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaa 37462985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 39427594 - 39427740
Alignment:
26 cttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttg---accaaagtaaaaagttt 122  Q
    ||||||||| ||| ||||||| |||||||||||||| ||||||| || |||   | ||| |||||| ||||||  |||     || |||||||| | |||    
39427594 cttccaacagaactttacttctatcactggaataacataaaggcttcaaagacattaaaggtgaattgaaacaccattcccctacaaaagtaaacaattt 39427693  T
123 acaccaactatctctagatccatattctttcatcacccaaccatcaa 169  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||    
39427694 acaccaactatatctatatccatattctttcatcacccaaacatcaa 39427740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 45243656 - 45243843
Alignment:
29 ccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacacca 128  Q
    |||||| ||| ||||||| |||||| ||||||| |||||||||| ||| |  ||||||  ||| |||||| ||||| |||||||||||||||||||||||    
45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 45243755  T
129 actatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaa 216  Q
    | |||||||||| ||||||||||||||||||||| ||||||||| | |||||| |||||||| |||||||||||||||| ||||||||    
45243756 aatatctctagaaccatattctttcatcacccaaacatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaa 45243843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 45230408 - 45230570
Alignment:
48 atcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatat 147  Q
    |||||| ||||||| |||||| ||| ||| |  ||||||  ||| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||    
45230408 atcactcgaataacataaaggtctcaaagataccaaatgaaaattgaaccacgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatat 45230507  T
148 tctttcatcaccca---accatcaattttagtagtttcataattcaaaatcatacaaagacac 207  Q
    ||||||||||||||   | ||||||||||| |||||| |||||||| ||||||||||||||||    
45230508 tctttcatcacccaaacatcatcaattttattagtttgataattcacaatcatacaaagacac 45230570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 45237907 - 45238059
Alignment:
29 ccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacacca 128  Q
    |||||| ||| ||||||| ||| || ||||||| |||||||||| |   | ||| |||  ||| |||||| ||||  || ||||||||||||||||||||    
45237907 ccaacagaactttacttcgatcgcttgaataacataaaggcctcaacaatttcagatgaaaattgaaacacgattcaactaaagtaaaaagtttacacca 45238006  T
129 actatctctagatccatattctttcatcacccaaccatcaattttagtagttt 181  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
45238007 actatctctagatccatattctttcatcacccaaacatcaatttgagtagttt 45238059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 93 - 225
Target Start/End: Original strand, 26574882 - 26575014
Alignment:
93 gaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaa 192  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  || ||||| || |    
26574882 gaaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccaca 26574981  T
193 atcatacaaagacaccctcccaaagcagcaaca 225  Q
     ||||||||||||||||||| ||| ||||||||    
26574982 gtcatacaaagacaccctcctaaatcagcaaca 26575014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 382 - 579
Target Start/End: Original strand, 26575163 - 26575360
Alignment:
382 tagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtct 481  Q
    ||||||||||||||||||| |||||  |   |  ||||||||||||||| || | | |||||||||||||||| |||||||||||  |||||||||||||    
26575163 tagaattctcaacaaaaacacccattgttcgagtatagtaaagagcgtaaggaaaattaggaattattttccatgagtttgttttcaagctgaagagtct 26575262  T
482 agcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 579  Q
    | |||||| |||||||||| |||||||   |  ||  ||  |||||||||||||||| |||||||| |||| ||| | ||||||||||||| ||||||    
26575263 aacatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaa 26575360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 561273 - 561340
Alignment:
123 acaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattca 190  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||||  |||||||||| || |||||    
561273 acaccaactatctctaaatccatattctttcattacccaaacatcaaccttagtagttttattattca 561340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 41966898 - 41966693
Alignment:
21 aattccttccaacacaaccttacttccatcactggaataacctaaaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagt 120  Q
    |||||||| ||||| |||||| |||||||| || ||| ||||||||  || | | | | |||||  ||||  |||||||||||| |||||||||||||||    
41966898 aattccttgcaacagaaccttccttccatcgctagaacaacctaaaacccccaaggatttcaaagatgaagtgaaacaagatttaaccaaagtaaaaagt 41966799  T
121 ttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataattcaaaatcatacaaagacaccctcccaaagcag 220  Q
    |||||||| ||||||||||||| ||||||||||||||||||| ||||||  |   |||||| ||||| || || |||||||||||||||||||||| |||    
41966798 ttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcgctagtttgataatccacaaccatacaaagacaccctcccaaaacag 41966699  T
221 caacag 226  Q
     |||||    
41966698 aaacag 41966693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 273 - 571
Target Start/End: Complemental strand, 41966672 - 41966374
Alignment:
273 cctatttcaggaggaaggggaacctcattgaaaatttcaagtgtgaggttaaatgcaacaattaaagaaggatgtaaccgatctagtttcttcgtcatta 372  Q
    |||||||||| |||||| |||||||  |||||||| |||||||| |||||||| || ||||||||| |||| ||||| | ||| |||| ||| |||||||    
41966672 cctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaggttaaacgcgacaattaaacaagggtgtaatccatcaagttccttggtcatta 41966573  T
373 tcaagtgaatagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagct 472  Q
    || |||||| |||||| | |||||||||||||||| | | | ||||||||||||| || |||||  | |||||||||||||| |||||  |||| |||||    
41966572 tccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttagagct 41966473  T
473 gaagagtctagcatgtgaatcataa--aaatggtt-ttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccg 569  Q
     || || ||  ||||||||||| ||  | |  ||| |||||||   |   ||||||||||||||||||| |||| ||| | |||||||||||||||||||    
41966472 aaatagcctgacatgtgaatcaaaagtagagagttgttgatca---aaagaccaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccg 41966376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 36224454 - 36224532
Alignment:
108 caaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaattttagtagtttcataa 186  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||| |||||    
36224454 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaatttattagttccataa 36224532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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