View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18396_high_5 (Length: 550)

Name: NF18396_high_5
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18396_high_5
NF18396_high_5
[»] chr2 (6 HSPs)
chr2 (20-540)||(5767794-5768314)
chr2 (29-540)||(5830122-5830638)
chr2 (24-278)||(5826401-5826655)
chr2 (345-534)||(5825920-5826109)
chr2 (24-278)||(5781853-5782107)
chr2 (343-509)||(5781363-5781529)
[»] chr6 (2 HSPs)
chr6 (29-276)||(29327642-29327889)
chr6 (343-540)||(29327968-29328165)
[»] scaffold0159 (3 HSPs)
scaffold0159 (24-278)||(27185-27439)
scaffold0159 (24-205)||(35389-35570)
scaffold0159 (343-509)||(26695-26861)


Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 20 - 540
Target Start/End: Complemental strand, 5768314 - 5767794
Alignment:
Q  20 gtatagacataaatctttgaaaatttgaatgtgaggtcttgttgggtaattaaagctgacatgttgaagttcaatatcgcctgtgactgtttctaatgtg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5768314 gtatagacataaatctttgaaaatttgaatgtgaggtcttgttgggtaattgaagctgacatgttgaagttcaatatcgcctgtgactgtttctaatgtg 5768215  T
Q  120 acaccttcattgctgctggagtcgatagtagggttactgtctagaatttcaaatattgaagctgcagaatctttggccttattagtgtcgggtgccaagg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5768214 acaccttcattgctgctggagtcgatagtagggttactgtctagaatttcaaatattgaagctgcagaatctttggccttattagtgtcgggtgccaagg 5768115  T
Q  220 tactagactgtgaaatgcctactgctgttatagttaaactaaagaaaacctgcataaaatatctcatgagaatgacaaaaaggaatcaagtaaatgttga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5768114 tactagactgtgaaatgcctactgctgttatagttaaactaaagaaaacctgcataaaatatctcatgagaatgacaaaaaggaatcaagtaaatgttga 5768015  T
Q  320 gaatctttaagttgattgattgttgtaccttgaaaacttcttgaaaagttgctttcccgtgttgcactaggacagatcctatgtagaaacaaaaagcact 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5768014 gaatctttaagttgattgattgttgtaccttgaaaacttcttgaaaagttgctttcccgtgttgcactaggacagatcctatgtagaaacaaaaagcact 5767915  T
Q  420 catgcaatatagagcgacaaaagagaaaccaaatcctgcaccactcacaagccctgaacgaacaccttgtttttctggccctgaacatttcttctggtac 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5767914 catgcaatatagagcgacaaaagagaaaccaaatcctgcaccactcacaagccctgaatgaacaccttgtttttctggccctgaacatttcttctggtac 5767815  T
Q  520 atatccatcacctttgcttct 540  Q
    |||||||||||||||| ||||    
T  5767814 atatccatcacctttgattct 5767794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 29 - 540
Target Start/End: Original strand, 5830122 - 5830638
Alignment:
Q  29 taaatctttgaaaatttgaatgtgaggtcttgttgggtaattaaagctgacatgttgaagttcaatatcgcctgtgactgtttctaatgtgacaccttca 128  Q
    |||||||||||||||||||||||  || |||||||||||||||||| |||||||||||||||||||||| ||    |||||||||  ||| |||||  ||    
T  5830122 taaatctttgaaaatttgaatgtcgggccttgttgggtaattaaagttgacatgttgaagttcaatatcaccaactactgtttctcgtgttacacccgca 5830221  T
Q  129 ttgctgctggagtcgatagtagggttactgtctagaatttcaaatattgaagctgcagaatctttggccttattagtgtcgggtgccaaggtactagact 228  Q
    ||||||||||| || |||  ||| || ||||| | |||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| | | ||    
T  5830222 ttgctgctggaatcaatatcaggtttgctgtcaataatttcaaatattgaagctgcagaatctttggccttgttagtgtctggtgccaatgtagtcgtct 5830321  T
Q  229 gtgaaatgcctactgctgttatagttaaactaaagaaaacctgcataaaatatctcatgaga-----atgacaaaaaggaatcaagtaaatgttgagaat 323  Q
    | |||| | | | ||| || || ||||||  |||||||||||| ||||| |||||  | |||     || | || ||  |   |||||||| |  || ||    
T  5830322 gcgaaacggcgattgccgtcattgttaaagcaaagaaaacctgtataaattatcttgtaagaactagatcaaaataaacataaaagtaaatataaagcat 5830421  T
Q  324 ctttaagttgattgattg-ttgtaccttgaaaacttcttgaaaagttgctttcccgtgttgcactaggacagatcctatgtagaaacaaaaagcactcat 422  Q
       ||||||| |||| || ||||||| |||||||||||  |||||||||||| |||||||||||||| |||||||||||||| |||   |||||| |  |    
T  5830422 -gctaagttggttgagtgattgtaccctgaaaacttctgtaaaagttgctttgccgtgttgcactagaacagatcctatgtaaaaaatgaaagcatttgt 5830520  T
Q  423 gcaatatagagcgacaaaagagaaaccaaatcctgcaccactcacaagccctgaacgaacaccttgtttttctggccctgaacatttcttctggtacata 522  Q
    |||||||||| | | ||| ||| | |||||||||  |||||| ||||||||  | ||||| ||||||||  |||| ||| ||||||| ||   ||||||     
T  5830521 gcaatatagaactaaaaacgagcagccaaatcctataccactaacaagccccaagcgaactccttgtttcgctgggcctaaacattttttactgtacatg 5830620  T
Q  523 tccatcacctttgcttct 540  Q
    ||||||||||||| ||||    
T  5830621 tccatcacctttgattct 5830638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 5826655 - 5826401
Alignment:
Q  24 agacataaatctttgaaaatttgaatgtgaggtcttgttgggtaattaaagctgacatgttgaagttcaatatcgcctgtgactgtttctaatgtgacac 123  Q
    ||||| ||||||||||| |||||||| | ||| |||||||||||  |||||||||| | ||||||||||| ||| ||| | || |||||||  ||  |||    
T  5826655 agacacaaatctttgaatatttgaatattaggccttgttgggtatctaaagctgactttttgaagttcaaaatcacctttcacagtttctagcgtcgcac 5826556  T
Q  124 cttcattgctgctggagtcgatagtagggttactgtctagaatttcaaatattgaagctgcagaatctttggccttattagtgtcgggtgccaaggtact 223  Q
    | ||||| || || ||||| || || || || |||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||||| || | |||    
T  5826555 cctcattactacttgagtcaatggttggtttgctgtctagaatttcaaatattgaagctgtagaatctttggccttgttagtatctggtgctaaagcact 5826456  T
Q  224 agactgtgaaatgcctactgctgttatagttaaactaaagaaaacctgcataaaa 278  Q
    || ||| ||||  |||| |||||| || |||||||  ||||||||||||| ||||    
T  5826455 agtctgcgaaacacctattgctgtaattgttaaacagaagaaaacctgcacaaaa 5826401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 345 - 534
Target Start/End: Complemental strand, 5826109 - 5825920
Alignment:
Q  345 taccttgaaaacttcttgaaaagttgctttcccgtgttgcactaggacagatcctatgtagaaacaaaaagcactcatgcaatatagagcgacaaaagag 444  Q
    |||||||||||| |||   ||||||||||| ||||||||||  || || ||||||||||||||||| |||||| |  |||| |||||||| | ||| |||    
T  5826109 taccttgaaaacctctccgaaagttgctttgccgtgttgcataagaactgatcctatgtagaaacagaaagcatttgtgcagtatagagcaaaaaatgag 5826010  T
Q  445 aaaccaaatcctgcaccactcacaagccctgaacgaacaccttgtttttctggccctgaacatttcttctggtacatatccatcaccttt 534  Q
    ||||| ||||||  |||||| ||||| ||  | | ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  5826009 aaaccgaatcctataccactaacaagtcccaacctaacaccttgtttttctggtgctgaacattttttctggtacatatccatcaccttt 5825920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 5782107 - 5781853
Alignment:
Q  24 agacataaatctttgaaaatttgaatgtgaggtcttgttgggtaattaaagctgacatgttgaagttcaatatcgcctgtgactgtttctaatgtgacac 123  Q
    ||||| ||||||||||| |||||||| | ||| |||||||||||  |||||||||| | ||||||||||| ||| ||| | || |||||||  ||  |||    
T  5782107 agacacaaatctttgaatatttgaatattaggccttgttgggtatctaaagctgactttttgaagttcaaaatcacctttcacagtttctagcgtcgcac 5782008  T
Q  124 cttcattgctgctggagtcgatagtagggttactgtctagaatttcaaatattgaagctgcagaatctttggccttattagtgtcgggtgccaaggtact 223  Q
    | ||||| || || ||||| || || || || |||||||||||||||||||||||||||| ||||||||||||||| ||||| || || || || | ||     
T  5782007 cctcattactacttgagtcaatggttggtttgctgtctagaatttcaaatattgaagctgtagaatctttggccttgttagtatctggggctaaagcacg 5781908  T
Q  224 agactgtgaaatgcctactgctgttatagttaaactaaagaaaacctgcataaaa 278  Q
    || ||| ||||  |||| |||||| || |||||||  ||||||||||||| ||||    
T  5781907 agtctgcgaaacacctattgctgtaattgttaaacagaagaaaacctgcacaaaa 5781853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 509
Target Start/End: Complemental strand, 5781529 - 5781363
Alignment:
Q  343 tgtaccttgaaaacttcttgaaaagttgctttcccgtgttgcactaggacagatcctatgtagaaacaaaaagcactcatgcaatatagagcgacaaaag 442  Q
    |||||||||||| | |||  || ||||||||| || |||| ||  || || ||||||||||||||||| ||| || |  |||| || ||||| | |||      
T  5781529 tgtaccttgaaatcctctccaagagttgctttgccatgttccataagaactgatcctatgtagaaacagaaatcatttgtgcagtaaagagcaaaaaatt 5781430  T
Q  443 agaaaccaaatcctgcaccactcacaagccctgaacgaacaccttgtttttctggccctgaacattt 509  Q
    |||||||||||||| ||||||| ||||| ||  | | ||||||||||| ||||||  ||||||||||    
T  5781429 agaaaccaaatcctacaccactaacaagtcccaacctaacaccttgttattctggtgctgaacattt 5781363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 29 - 276
Target Start/End: Original strand, 29327642 - 29327889
Alignment:
Q  29 taaatctttgaaaatttgaatgtgaggtcttgttgggtaattaaagctgacatgttgaagttcaatatcgcctgtgactgtttctaatgtgacaccttca 128  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||| |||| ||||||||||| || | |||   ||| ||||||  ||| ||||| |||    
T  29327642 taaatctttgaaaatttgaatgtcgggtcttgttgggtaactaaagttgacgtgttgaagttcgatgttgccaacgacagtttcttgtgttacaccatca 29327741  T
Q  129 ttgctgctggagtcgatagtagggttactgtctagaatttcaaatattgaagctgcagaatctttggccttattagtgtcgggtgccaaggtactagact 228  Q
    ||||||||||| || |||  ||| || ||||| ||||| | ||||||||||||||| |||||| ||||||| |||||||||||   ||| |||  |||||    
T  29327742 ttgctgctggaatcaatatcaggtttgctgtcaagaatgttaaatattgaagctgcggaatctatggccttgttagtgtcgggaaacaatgtagaagact 29327841  T
Q  229 gtgaaatgcctactgctgttatagttaaactaaagaaaacctgcataa 276  Q
    | ||||     | |||||| || || ||||||||||||||||||||||    
T  29327842 gggaaacagacattgctgtcattgtcaaactaaagaaaacctgcataa 29327889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 343 - 540
Target Start/End: Original strand, 29327968 - 29328165
Alignment:
Q  343 tgtaccttgaaaacttcttgaaaagttgctttcccgtgttgcactaggacagatcctatgtagaaacaaaaagcactcatgcaatatagagcgacaaaag 442  Q
    |||||| |||||| ||||  ||| |||||||||| ||| |||||||  | |||||||||||||||    |||||| |  |||||||||||   | |||||    
T  29327968 tgtaccctgaaaatttctacaaacgttgctttcctgtgatgcactaaaatagatcctatgtagaagatgaaagcatttgtgcaatatagaattaaaaaag 29328067  T
Q  443 agaaaccaaatcctgcaccactcacaagccctgaacgaacaccttgtttttctggccctgaacatttcttctggtacatatccatcacctttgcttct 540  Q
    | |||||||||||| ||||||| |||||||| || ||||||||||||||  |||| || |||||||| |||  |||||| ||||||||||||| ||||    
T  29328068 ataaaccaaatcctacaccactaacaagccccgagcgaacaccttgtttcgctggtccagaacattttttcccgtacatgtccatcacctttgattct 29328165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 27439 - 27185
Alignment:
Q  24 agacataaatctttgaaaatttgaatgtgaggtcttgttgggtaattaaagctgacatgttgaagttcaatatcgcctgtgactgtttctaatgtgacac 123  Q
    ||||| ||||||||||| |||||||| | ||| |||||||||||  |||||||||| | ||||||||||| ||| ||| | || |||||||  ||  |||    
T  27439 agacacaaatctttgaatatttgaatattaggccttgttgggtatctaaagctgactttttgaagttcaaaatcacctttcacagtttctagcgtcgcac 27340  T
Q  124 cttcattgctgctggagtcgatagtagggttactgtctagaatttcaaatattgaagctgcagaatctttggccttattagtgtcgggtgccaaggtact 223  Q
    | ||||| || || ||||| || || || || |||||||||||||||||||||||||||| ||||||||||||||| ||||| || || || || | ||     
T  27339 cctcattactacttgagtcaatggttggtttgctgtctagaatttcaaatattgaagctgtagaatctttggccttgttagtatctggggctaaagcacg 27240  T
Q  224 agactgtgaaatgcctactgctgttatagttaaactaaagaaaacctgcataaaa 278  Q
    || ||| ||||  |||| |||||| || |||||||  ||||||||||||| ||||    
T  27239 agtctgcgaaacacctattgctgtaattgttaaacagaagaaaacctgcacaaaa 27185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 35570 - 35389
Alignment:
Q  24 agacataaatctttgaaaatttgaatgtgaggtcttgttgggtaattaaagctgacatgttgaagttcaatatcgcctgtgactgtttctaatgtgacac 123  Q
    ||||| ||||||||||| |||||||| | ||| |||||||||||  |||||||||| | ||||||||||| ||| ||| | || |||||||  ||  |||    
T  35570 agacacaaatctttgaatatttgaatattaggccttgttgggtatctaaagctgactttttgaagttcaaaatcacctttcacagtttctagcgtcgcac 35471  T
Q  124 cttcattgctgctggagtcgatagtagggttactgtctagaatttcaaatattgaagctgcagaatctttggccttattagt 205  Q
    | ||||| || || ||||| || || || || |||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  35470 cctcattactacttgagtcaatggttggtttgctgtctagaatttcaaatattgaagctgtagaatctttggccttgttagt 35389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 509
Target Start/End: Complemental strand, 26861 - 26695
Alignment:
Q  343 tgtaccttgaaaacttcttgaaaagttgctttcccgtgttgcactaggacagatcctatgtagaaacaaaaagcactcatgcaatatagagcgacaaaag 442  Q
    |||||||||||| | |||  || ||||||||| || |||| ||  || || ||||||||||||||||| ||| || |  |||| || ||||| | |||      
T  26861 tgtaccttgaaatcctctccaagagttgctttgccatgttccataagaactgatcctatgtagaaacagaaatcatttgtgcagtaaagagcaaaaaatt 26762  T
Q  443 agaaaccaaatcctgcaccactcacaagccctgaacgaacaccttgtttttctggccctgaacattt 509  Q
    |||||||||||||| ||||||| ||||| ||  | | ||||||||||| ||||||  ||||||||||    
T  26761 agaaaccaaatcctacaccactaacaagtcccaacctaacaccttgttattctggtgctgaacattt 26695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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