View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18396_high_6 (Length: 483)
Name: NF18396_high_6
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18396_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 4068617 - 4068286
Alignment:
| Q |
16 |
aaacaatcattcaaaatcatctatcatacaagtttgtatttgattttccaccaaatttataggagaaaacttttttcttagtctcattttgtatttagtt |
115 |
Q |
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| T |
4068617 |
aaacaatcattcaaaatcatctatcatacaagtttgtatttgattttccaccaaatttattggagaaaacttttttcttagtctcattttgtatttagtt |
4068518 |
T |
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| Q |
116 |
aggcaagatacagttttaagtagaagcaacaactaaaatatgcaataaacaacattttgtgtcatgattgttttggtgcattgtaattggtgttggagcc |
215 |
Q |
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| T |
4068517 |
aggcaagatacagttttaagtagaagcaacaactaaaatatgcaataaacaacattttgtgccatgattgttttggtgcattgtaattggtgttggagcc |
4068418 |
T |
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| Q |
216 |
ttggtttgaagccacaatgaaagcttcagaaggtggtttgtgtttttggaagcaatgcaaggtttgttagagactattaacacttgagtagcttgttaag |
315 |
Q |
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| T |
4068417 |
ttggtttgaagccaaaatgaaagcttcagaaggtggtttgtgtttttggaagcaatgcaagg-ttgtta----------------gagtagcttgttaag |
4068335 |
T |
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| Q |
316 |
ttggtgtatcttttgcatgttatgctagtttgataccggtgttcttcat |
364 |
Q |
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| T |
4068334 |
ttggtgtatcttttgcatgttatgctagtttgataccggtgtttttcat |
4068286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 354 - 467
Target Start/End: Complemental strand, 4068238 - 4068125
Alignment:
| Q |
354 |
gtgttcttcatgtttgaacattgtacccgtgtttgtccttccttttgggttttgattaataaaattcagttaattacagaaagaatgaaaagctaccgat |
453 |
Q |
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| T |
4068238 |
gtgttcttcatgtttgaacattgtacccgtgtttgtccttccttttgggttttgattaataaaattcagttaattacagcaagaatgaaaagctaccgat |
4068139 |
T |
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| Q |
454 |
gattcacaaccttt |
467 |
Q |
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| T |
4068138 |
gattcacaaccttt |
4068125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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