View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18396_high_8 (Length: 421)
Name: NF18396_high_8
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18396_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 17145428 - 17145818
Alignment:
| Q |
18 |
gttgaataatgagttctgtgagttgcttcacctgcaaacaaaatttgaagtggatatgaaaaattgctattatctttatctttcatcattggtaatggtt |
117 |
Q |
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| T |
17145428 |
gttgaataatgagttctgtgagttgcttcacctgcaaacaaaatttgaagtggatatgaaaaattgctattat------ctttcatcattggtaatggtt |
17145521 |
T |
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| Q |
118 |
cagccattgtatctaaatcttcaccacttgaaccaacttgaacataactgtatgatcctaaaaacaaaggatcagtcccccatttactcttcaaaacttt |
217 |
Q |
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| T |
17145522 |
cagccattgtatctaaatcttcaccacttgaaccaacttgaacataactgtatgatcctaaaaacaaaggatcagtcccccattgactcttcaaaacttt |
17145621 |
T |
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| Q |
218 |
atcaaatttcacttcattttgaggtaaaaagcttgaaactgttgatgtaacaccattgattatttcttcatctttgagtgattcaagtgctaatgcttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17145622 |
atcaaatttcacttcattttgaggtaaaaagcttgaaactgttgatgtaacaccgttgattatttcttcatctttgagtgattcaagtgctaatgcttct |
17145721 |
T |
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| Q |
318 |
tcaccagcaaaccaagataagagaacacttgaattgttgtaaataggaaaaagtgtagctgtttttctcatccaccatggtattttcttgtcctttg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17145722 |
tcaccagcaaaccaagataagagaacacttgaattgttgtaaataggaaaaagtgtagctgtttttctcatccaccatggtattttcttgtcctttg |
17145818 |
T |
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