View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18396_high_9 (Length: 384)
Name: NF18396_high_9
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18396_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 35834192 - 35833829
Alignment:
| Q |
18 |
ggtttttctagattggaaaactcaaatcatctcctaataatacgccaaaatgcgaaataaatatcttctcgtactgccggtagcttgccataaaactgac |
117 |
Q |
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| T |
35834192 |
ggtttttctagattggaaaactcaaatcatctcctaataatacgccaaaatgcgaaataaatatcttctcgtactgccggtagctggccataaaactgac |
35834093 |
T |
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| Q |
118 |
ttttctatcaatgcagtatccagttggttattaggctacaccgtttgtggcaattatggcataagattcttatannnnnnn------gttttgatgttag |
211 |
Q |
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| T |
35834092 |
ttttctatcaatgcagtatccagttggttattaggctacaccgtttgtggtaattatggcataagattcttatatatttttttttttgttttgatgttag |
35833993 |
T |
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| Q |
212 |
tatcagggtcctttctaaccaggtgatagaaaatacaagacatgtttgatacatattctagtttagtttggaatttataaatctttgttagcttttctta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35833992 |
tatcagggtcctttctaaccaggtgatagaaaatacaagacatgtttgatacatattctagtttagtttggaatttataaatctttattagcttttctta |
35833893 |
T |
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| Q |
312 |
ctgacaaggtggtgtaaaaaatcattatttagaacttaaatgagatcttagaataaatgatgat |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35833892 |
ctgacaaggtggtgtaaaaaatcattatttagaacttaaatgagatcttagaataaatgatgat |
35833829 |
T |
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