View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18396_low_1 (Length: 984)

Name: NF18396_low_1
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18396_low_1
NF18396_low_1
[»] chr1 (13 HSPs)
chr1 (17-541)||(33861425-33861958)
chr1 (17-541)||(33918964-33919497)
chr1 (544-969)||(29255027-29255464)
chr1 (581-967)||(13263774-13264171)
chr1 (567-697)||(9981375-9981505)
chr1 (550-712)||(29254657-29254820)
chr1 (544-671)||(17238399-17238527)
chr1 (544-671)||(6632008-6632136)
chr1 (544-657)||(6631316-6631429)
chr1 (544-670)||(17237705-17237832)
chr1 (612-712)||(13264371-13264472)
chr1 (541-592)||(19990273-19990324)
chr1 (541-592)||(47966992-47967043)
[»] chr4 (3 HSPs)
chr4 (588-969)||(32526833-32527223)
chr4 (539-689)||(32527453-32527604)
chr4 (540-586)||(27110485-27110531)
[»] chr2 (8 HSPs)
chr2 (542-969)||(30617392-30617831)
chr2 (544-657)||(41320009-41320122)
chr2 (548-670)||(13545291-13545414)
chr2 (544-708)||(13544598-13544762)
chr2 (544-671)||(41320703-41320831)
chr2 (552-619)||(11169280-11169347)
chr2 (538-618)||(8143321-8143402)
chr2 (544-621)||(15555016-15555093)
[»] chr3 (3 HSPs)
chr3 (544-657)||(52362640-52362753)
chr3 (544-648)||(16674246-16674350)
chr3 (569-671)||(16673555-16673658)
[»] chr5 (3 HSPs)
chr5 (540-671)||(41516456-41516588)
chr5 (544-592)||(8469813-8469861)
chr5 (607-670)||(41517157-41517221)
[»] chr6 (3 HSPs)
chr6 (561-703)||(14125165-14125308)
chr6 (789-840)||(14125605-14125656)
chr6 (540-586)||(2479292-2479338)


Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Complemental strand, 33861958 - 33861425
Alignment:
Q  17 aatatgagcaatatacggccttgtgcatgccttaacatacacaaagctatctttgtggatgcatatggaaccatctctatatcttcttgatcttttcact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33861958 aatatgagcaatatacggccttgtgcatgccttaacatacacaaaactatctt-gtggatgcatatggaaccatctctatatcttcttgatcttttcact 33861860  T
Q  117 tgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861859 tgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgta 33861760  T
Q  217 atttcgttgagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattg 316  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861759 attgcgttgagacaaccacaa-tttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattg 33861661  T
Q  317 caaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttttaccttctaccacttaag-----------aagtgg 405  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||           ||||||    
T  33861660 caaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttctaccacttaagaaattttgtttaagtgg 33861561  T
Q  406 tctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattagcttatattgaaacacaattaatatta 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33861560 tctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattaacttatattgaaacacaattaatatta 33861461  T
Q  506 ttattcgaaccgcttactacatgtatattctaaaaa 541  Q
     |||||||||||||||||||||||||||||||||||    
T  33861460 gtattcgaaccgcttactacatgtatattctaaaaa 33861425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Original strand, 33918964 - 33919497
Alignment:
Q  17 aatatgagcaatatacggccttgtgcatgccttaacatacacaaagctatctttgtggatgcatatggaaccatctctatatcttcttgatcttttcact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33918964 aatatgagcaatatacggccttgtgcatgccttaacatacacaaaactatctt-gtggatgcatatggaaccatctctatatcttcttgatcttttcact 33919062  T
Q  117 tgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919063 tgtagggcattattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgta 33919162  T
Q  217 atttcgttgagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattg 316  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33919163 attgcgttgagacaaccacaa-tttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattg 33919261  T
Q  317 caaaagacttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttttaccttctaccacttaag-----------aagtgg 405  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||           ||||||    
T  33919262 caaaagacttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttctaccacttaagaaattttgtttaagtgg 33919361  T
Q  406 tctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattagcttatattgaaacacaattaatatta 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33919362 tctattttacttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattaacttatattgaaacacaattaatatta 33919461  T
Q  506 ttattcgaaccgcttactacatgtatattctaaaaa 541  Q
     |||||||||||||||||||||||||||||||||||    
T  33919462 gtattcgaaccgcttactacatgtatattctaaaaa 33919497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 544 - 969
Target Start/End: Complemental strand, 29255464 - 29255027
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 643  Q
    ||||||||||||| |||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29255464 ggagggatatattgactctaagagtaagtttctagacttacaccaaatcacaacctttcattgtattttaatctaatggcttgaatgatagttttaaatg 29255365  T
Q  644 ttaatcatgtgacctctttttggatctccatccaaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactc 743  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29255364 ttaatcatatgacctctttttggatctccatccaaataaagacattctccaattattctcccttaattaaacaaaaatctcgttcctcttaaactcactc 29255265  T
Q  744 ttaaatgtgtttgtttttaatttcagttaaaataac-aannnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata-- 840  Q
    ||||||||||| |||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  29255264 ttaaatgtgttcgtttttaatttcagttaaaataacaaaaaattttaactccattatataagtaactcgcccaattgaatttgtatataccatccatatt 29255165  T
Q  841 ---nnnnnnngagggaatataccatccatatttcttttgattg------gatcatgacaggagttagaatggtgggtttaccttgcactccacagcctcg 931  Q
               ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  29255164 tttttttttttagggaatataccatccatatttcttttgattggatattgatcatgacaggagttagaatggtaggtttaccttccactccacagcctcg 29255065  T
Q  932 tctctacatgctcccattctctgccattggttttatgt 969  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  29255064 tctctacatgctcccattctctgtcattggttttatgt 29255027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 581 - 967
Target Start/End: Original strand, 13263774 - 13264171
Alignment:
Q  581 ttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaat 680  Q
    |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13263774 ttactccaaatcacaacctttcattgtattttaatctaacggttcgaatgatagttttaaatgttaatcatgtgacctctttttg-atctccatccaaat 13263872  T
Q  681 aaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaataac- 779  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  13263873 aaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgtttttaatttcagttaaaataaca 13263972  T
Q  780 aannnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata-----nnnnnnngagggaatataccatccatatttcttt 874  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||| ||||||||||||    
T  13263973 aatttttttaactccattatataagtaactcgcccaattgaatttgtatataccatccatattttttttttttgagggaatataccaaccatatttcttt 13264072  T
Q  875 tgattg------gatcatgacaggagttagaatggtgggtttaccttgcactccacagcctcgtctctacatgctcccattctctgccattggttttat 967  Q
    ||||||      |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||    
T  13264073 tgattggatattgatcatgacaggagttagaatggtaggtttaccttccattccacagcctcgtctctacatgctcccattctctaccattggttttat 13264171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 567 - 697
Target Start/End: Complemental strand, 9981505 - 9981375
Alignment:
Q  567 gtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttgg 666  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  9981505 gtaagtttgtagacttactccaaatcacaacctttcattgtattttaatctaacgacttgaatgataattttaaatgttaaacatgtgacctctttttgg 9981406  T
Q  667 atctccatccaaataaaaactttctccaatt 697  Q
    ||||||||||  ||||| |||||||||||||    
T  9981405 atctccatcctgataaagactttctccaatt 9981375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 550 - 712
Target Start/End: Original strand, 29254657 - 29254820
Alignment:
Q  550 atatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatc 649  Q
    |||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  29254657 atattttaactccaagagtaagtttgtagacttactccaaatcataacctttcattatattttaatctaacggcttgaatgatagtcttaattgttaatc 29254756  T
Q  650 atgtga-cctctttttggatctccatccaaataaaaactttctccaattattctcccttaatta 712  Q
    |||||| |||||||||| |||||| |||  ||||| ||||||||  |||||||||  |||||||    
T  29254757 atgtgaccctctttttgaatctccttcctcataaatactttctctgattattctcttttaatta 29254820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 544 - 671
Target Start/End: Complemental strand, 17238527 - 17238399
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 643  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  17238527 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 17238428  T
Q  644 ttaatcatgtgacc-tctttttggatctc 671  Q
    |||||||||||||| ||||||||||||||    
T  17238427 ttaatcatgtgaccatctttttggatctc 17238399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 544 - 671
Target Start/End: Complemental strand, 6632136 - 6632008
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 643  Q
    |||||||||| |  ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  6632136 ggagggatatttagactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 6632037  T
Q  644 ttaatcatgtgacc-tctttttggatctc 671  Q
    |||||||||||||| ||||||||||||||    
T  6632036 ttaatcatgtgaccatctttttggatctc 6632008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 544 - 657
Target Start/End: Original strand, 6631316 - 6631429
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 643  Q
    |||||||||| || |||||||| |||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  6631316 ggagggatattttgactccaagggtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 6631415  T
Q  644 ttaatcatgtgacc 657  Q
    ||||||||||||||    
T  6631416 ttaatcatgtgacc 6631429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 544 - 670
Target Start/End: Original strand, 17237705 - 17237832
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 643  Q
    |||||||||| || ||| ||||||||||||| ||||||||||| ||||  | |||||||||  ||||||||||||| || || ||||  |||||||| ||    
T  17237705 ggagggatattttgactgcaagagtaagtttatagacttactccaaatatccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg 17237804  T
Q  644 ttaatcatgtgacc-tctttttggatct 670  Q
    |||||||||||||| ||||| |||||||    
T  17237805 ttaatcatgtgaccatctttgtggatct 17237832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 612 - 712
Target Start/End: Complemental strand, 13264472 - 13264371
Alignment:
Q  612 taatctaacggcttgaatgatagttttaaatgttaatcatgtga-cctctttttggatctccatccaaataaaaactttctccaattattctcccttaat 710  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||| |||  ||||| ||||| ||  |||||||||  |||||    
T  13264472 taatctaacggcttgaatgatagtcttaattgttaatcatgtgaccctctttttgaatctccttcctcataaatactttatctgattattctcttttaat 13264373  T
Q  711 ta 712  Q
    ||    
T  13264372 ta 13264371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 592
Target Start/End: Original strand, 19990273 - 19990324
Alignment:
Q  541 aggggagggatatattaactccaagagtaagtttttagacttactctaaatc 592  Q
    |||||||||||||||| ||||||||||||||| |  |||||||||| |||||    
T  19990273 aggggagggatatattgactccaagagtaagtctaaagacttactccaaatc 19990324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 592
Target Start/End: Original strand, 47966992 - 47967043
Alignment:
Q  541 aggggagggatatattaactccaagagtaagtttttagacttactctaaatc 592  Q
    |||||||||||||||| ||||||||||||||| |||| | |||||| |||||    
T  47966992 aggggagggatatattgactccaagagtaagtgtttaaagttactccaaatc 47967043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 588 - 969
Target Start/End: Original strand, 32526833 - 32527223
Alignment:
Q  588 aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaataaaaact 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32526833 aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaataaagact 32526932  T
Q  688 ttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaataac--aannnn 785  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  ||        
T  32526933 ttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgttttttatttcagttaaaataacaaaaaaaa 32527032  T
Q  786 nnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata-nnnnnnngagggaatataccatccatatttcttttgattgg--- 881  Q
       |||||||||||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||||||||||       
T  32527033 tttaactccattatataagtaactcgcccaattgaatttctatataccatccatatttttttttagggaatataccatccatatttcttttgattggata 32527132  T
Q  882 ---atcatgacaggagttagaatggtgggtttaccttgcactccacagcctcgtctctacatgctcccattctctgccattggttttatgt 969  Q
       ||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32527133 ttaatcatgacaagagttagaatggtaggtttaccttccactccacagcctcgtctctacatgctcccattctctgccattggttttatgt 32527223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 539 - 689
Target Start/End: Complemental strand, 32527604 - 32527453
Alignment:
Q  539 aaaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttt 638  Q
    ||||||||| ||||| || |||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||    
T  32527604 aaaggggagagatattttgactctaagagtaagtttgtagacttactccaaatcacaacctttcattatattttaatctaacagcttgaatgatagtctt 32527505  T
Q  639 aaatgttaatcatgtga-cctctttttggatctccatccaaataaaaacttt 689  Q
    || |||||||||||||| |||||||||| |||||| |||  ||||| |||||    
T  32527504 aattgttaatcatgtgaccctctttttgaatctccttcctcataaatacttt 32527453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 540 - 586
Target Start/End: Complemental strand, 27110531 - 27110485
Alignment:
Q  540 aaggggagggatatattaactccaagagtaagtttttagacttactc 586  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  27110531 aaggggagggatatattgactccaagagtaagtgtttaaagttactc 27110485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 542 - 969
Target Start/End: Original strand, 30617392 - 30617831
Alignment:
Q  542 ggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaa 641  Q
    ||||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30617392 ggggagggatatattgactcaaaaagtaagtttctagacttactctaaatcacaacctttcattgtattttaatctaacagcttgaatgatagttttaaa 30617491  T
Q  642 tgttaatcatgtgacctctttttggatctccatccaaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcac 741  Q
    | |||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30617492 tattaaccatgtgacctctttttggatctccatccacacaaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcac 30617591  T
Q  742 tcttaaatgtgtttgtttttaatttcagttaaaataacaa---nnnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatcca 838  Q
    ||||||||||||| ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30617592 tcttaaatgtgttcgtttttaatttcagttaaaataacaaatttttttttaactccattatataagtaactcgcccaattgaattggtatataccatcca 30617691  T
Q  839 ta---nnnnnnngagggaatataccatccatatttcttttgattg------gatcatgacaggagttagaatggtgggtttaccttgcactccacagcct 929  Q
    ||          |||||||||||||||||||||||||||||||||      |||||||| ||||||||||||||| |||||||||| ||||||| | |||    
T  30617692 tattttttttttgagggaatataccatccatatttcttttgattggatattgatcatgagaggagttagaatggtaggtttaccttccactccataacct 30617791  T
Q  930 cgtctctacatgctcccattctctgccattggttttatgt 969  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  30617792 cgtctctacatgttcccattctctgtcattggttttatgt 30617831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 544 - 657
Target Start/End: Original strand, 41320009 - 41320122
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 643  Q
    |||||||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  41320009 ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 41320108  T
Q  644 ttaatcatgtgacc 657  Q
    ||||||||||||||    
T  41320109 ttaatcatgtgacc 41320122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 548 - 670
Target Start/End: Complemental strand, 13545414 - 13545291
Alignment:
Q  548 ggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaa 647  Q
    |||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| ||||| ||||   ||||||| ||||||    
T  13545414 ggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgggttttaattgttaa 13545315  T
Q  648 tcatgtgacc-tctttttggatct 670  Q
    |||| ||||| ||||| |||||||    
T  13545314 tcatatgaccatctttgtggatct 13545291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 544 - 708
Target Start/End: Original strand, 13544598 - 13544762
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 643  Q
    |||||||||| || ||| ||||||||||||| |||||||| || ||||| | |||||||||  |||||||||||||  | || ||||  |||||||| ||    
T  13544598 ggagggatattttgacttcaagagtaagtttatagacttattccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagttttaattg 13544697  T
Q  644 ttaatcatgtgacc-tctttttggatctccatccaaataaaaactttctccaattattctccctta 708  Q
    |||||||||||||| | ||||||||||| ||| |  ||||| | |||||||| ||| |||||||||    
T  13544698 ttaatcatgtgaccatttttttggatct-cattcttataaatattttctccatttaatctccctta 13544762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 544 - 671
Target Start/End: Complemental strand, 41320831 - 41320703
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 643  Q
    |||| ||||| || ||||||| ||||||||| ||||||||||| ||||| | |||||||||  ||||||||||||| || || ||||  | |||||| ||    
T  41320831 ggagagatattttgactccaatagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgaattttaattg 41320732  T
Q  644 ttaatcatgtgacc-tctttttggatctc 671  Q
    ||||||||| |||| ||||||||||||||    
T  41320731 ttaatcatgcgaccatctttttggatctc 41320703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 619
Target Start/End: Original strand, 11169280 - 11169347
Alignment:
Q  552 atattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaa 619  Q
    ||||| ||||||||| ||||||| |||| |||||||||||| | |||||||||   ||||||||||||    
T  11169280 atattgactccaagaataagtttatagatttactctaaatctccacctttcatctcattttaatctaa 11169347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 538 - 618
Target Start/End: Complemental strand, 8143402 - 8143321
Alignment:
Q  538 aaaaggggagggatatattaactccaa-gagtaagtttttagacttactctaaatcacaacctttcattgtattttaatcta 618  Q
    |||||||||||||||| || ||||||| |||||| | ||| || |||||| |||||||| || |||||| | ||||||||||    
T  8143402 aaaaggggagggatattttgactccaaggagtaactcttttgagttactccaaatcacatcccttcattatgttttaatcta 8143321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 544 - 621
Target Start/End: Complemental strand, 15555093 - 15555016
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacg 621  Q
    |||||||||| |||||||||||||||| | |||  | |||||| |||||||| || | |||| |||||||||| ||||    
T  15555093 ggagggatattttaactccaagagtaactcttttaagttactccaaatcacatccctccattttattttaatccaacg 15555016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 544 - 657
Target Start/End: Original strand, 52362640 - 52362753
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 643  Q
    |||||||||| || ||||||||||||||||| ||||| ||||| ||||| | |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  52362640 ggagggatattttgactccaagagtaagtttatagacctactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 52362739  T
Q  644 ttaatcatgtgacc 657  Q
    ||||||||||||||    
T  52362740 ttaatcatgtgacc 52362753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 544 - 648
Target Start/End: Complemental strand, 16674350 - 16674246
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg 643  Q
    |||| ||||| || |||| |||||||||||| ||||||||||| |||||   |||||||||  ||||||||||||| ||||| ||||  |||||||| ||    
T  16674350 ggagagatattttgactcaaagagtaagtttatagacttactccaaatctacacctttcatcttattttaatctaatggcttaaatgtgagttttaattg 16674251  T
Q  644 ttaat 648  Q
    |||||    
T  16674250 ttaat 16674246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 569 - 671
Target Start/End: Original strand, 16673555 - 16673658
Alignment:
Q  569 aagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacc-tctttttgga 667  Q
    |||||| ||||||||||| ||||  | |||||||||  ||||||||||||| || || ||||  | |||||| |||||||||||||||| ||||||||||    
T  16673555 aagtttatagacttactcaaaatatccacctttcatcttattttaatctaatggtttaaatgtgaattttaattgttaatcatgtgaccatctttttgga 16673654  T
Q  668 tctc 671  Q
    ||||    
T  16673655 tctc 16673658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 540 - 671
Target Start/End: Original strand, 41516456 - 41516588
Alignment:
Q  540 aaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttta 639  Q
    |||||||||||||| || |||| |||||||  ||| ||||||||||| ||||| | |||||||||  |||||||||||||  | || ||||  |||||||    
T  41516456 aaggggagggatattttgactctaagagtatatttatagacttactccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagtttta 41516555  T
Q  640 aatgttaatcatgtgacc-tctttttggatctc 671  Q
    | |||||||||||||||| ||||||| ||||||    
T  41516556 attgttaatcatgtgaccatcttttttgatctc 41516588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 544 - 592
Target Start/End: Complemental strand, 8469861 - 8469813
Alignment:
Q  544 ggagggatatattaactccaagagtaagtttttagacttactctaaatc 592  Q
    |||||||||| || ||||||||||||| ||| |||||||||||||||||    
T  8469861 ggagggatattttgactccaagagtaaatttatagacttactctaaatc 8469813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 607 - 670
Target Start/End: Complemental strand, 41517221 - 41517157
Alignment:
Q  607 tattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacc-tctttttggatct 670  Q
    ||||||||||||| ||||| ||||  |||||||| |||||||||||||||| ||||| |||||||    
T  41517221 tattttaatctaatggcttaaatgtgagttttaattgttaatcatgtgaccatctttgtggatct 41517157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 561 - 703
Target Start/End: Original strand, 14125165 - 14125308
Alignment:
Q  561 ccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctc- 659  Q
    |||| ||||||||| ||||||||||| ||||| | |||||||||| ||||||||| |||||||||||    ||||||||| ||||||| |||| |||||     
T  14125165 ccaaaagtaagtttatagacttactccaaatcgctacctttcattttattttaatttaacggcttgatcattagttttaattgttaataatgtaacctcc 14125264  T
Q  660 tttttggatctccatccaaataaaaactttctccaattattctc 703  Q
    |||||  |||||  ||   ||||| |||||||||||||||||||    
T  14125265 tttttaaatctcattcttcataaatactttctccaattattctc 14125308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 789 - 840
Target Start/End: Complemental strand, 14125656 - 14125605
Alignment:
Q  789 aactccattatataagtaactcgcccaattgaatttgtatataccatccata 840  Q
    ||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  14125656 aactccattatataagtaacttgcccaattgattttgaatataccatccata 14125605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 540 - 586
Target Start/End: Original strand, 2479292 - 2479338
Alignment:
Q  540 aaggggagggatatattaactccaagagtaagtttttagacttactc 586  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  2479292 aaggggagggatatattgactccaagagtaagtgtttaaagttactc 2479338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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