View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18396_low_11 (Length: 375)
Name: NF18396_low_11
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18396_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 51 - 359
Target Start/End: Original strand, 44265570 - 44265863
Alignment:
| Q |
51 |
actacgaagtttttcgattatcttgaaggcctctttcctaagactcaagtttggtgatgcatctttctcacttggctcacatgctgatccatccaataat |
150 |
Q |
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| T |
44265570 |
actacgaagtttttcgattatcttgaaggcctctttcctaagactcaagtttggtggtgcatctttctcacttggctcacttgctgatccatccaataat |
44265669 |
T |
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| Q |
151 |
actgatccatcacaaccctgcattttcannnnnnnaatccataaataaccaaatataataagtttggatttccaaagttagctaaacagattcatgctaa |
250 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44265670 |
actgatccatcacaaccctgcattttcatttttttaatccataaataaccaaatataataagtttggatttccaaagtta---------------gctaa |
44265754 |
T |
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| Q |
251 |
tttaatcaccacatatgctaattacaagcattgtaatgcttaattagtattgtttatagtataagctgatcctaactaattaagctaaatatacattaaa |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44265755 |
tttaatcaccacatatgctaattacaagcattgtaatgcttaattagtattgtttatagtataagctgatcctaactaattaagctaaatatacattaaa |
44265854 |
T |
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