View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18396_low_12 (Length: 371)
Name: NF18396_low_12
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18396_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 179 - 357
Target Start/End: Complemental strand, 23955628 - 23955452
Alignment:
| Q |
179 |
cttatgcaacctcaattgtgtggcaatcacgtggtcaataaaacatcaaaattactttcgcactgtgattttgttgacgctttaaaatgtaacttttgtc |
278 |
Q |
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| T |
23955628 |
cttatgcaacctcaattgct--gcaatcacgtggtcgataaaacatcaaaattacttttgcactgtgattttgttgaagctttaaaatgtaacttttgtc |
23955531 |
T |
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| Q |
279 |
ggaatcataatagttcaccgtgattctgtccatctcgtcgttaaattgcattgattgaatattcttatgaaatttagat |
357 |
Q |
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| T |
23955530 |
ggaatcacaatagttcaccgtgattctgtccatgtcaccgttaaattgcattgattgaatattcttatgaaatttagat |
23955452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 23955799 - 23955713
Alignment:
| Q |
8 |
gagcagagagagttggttgaacttgttgatgtcaaacttggtcaagaatatgaacttgttgtcactacttatgctggtaagactaag |
94 |
Q |
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| T |
23955799 |
gagcagaaagagttggttgaacttgttgatgtcaaacttggtcaagaatatgagcttgttgtcactacttatgctggtaagactaag |
23955713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 34380849 - 34380918
Alignment:
| Q |
16 |
agagttggttgaacttgttgatgtcaaacttggtcaagaatatgaacttgttgtcactacttatgctggt |
85 |
Q |
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| T |
34380849 |
agaggtggtggatcttgttgatgtcaagcttggtcaagaatatgagcttgttgttactacttatgctggt |
34380918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 15836802 - 15836738
Alignment:
| Q |
23 |
gttgaacttgttgatgtcaaacttggtcaagaatatgaacttgttgtcactacttatgctggtaa |
87 |
Q |
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| T |
15836802 |
gttgaacttgttgatgttgagttgggtcaagaatatgaacttgtggtcaccacttatgcaggtaa |
15836738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 5717814 - 5717849
Alignment:
| Q |
240 |
actgtgattttgttgacgctttaaaatgtaactttt |
275 |
Q |
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| T |
5717814 |
actgtgattttgttgaagctttaaaatgtaactttt |
5717849 |
T |
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