View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18396_low_18 (Length: 277)
Name: NF18396_low_18
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18396_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 807036 - 806784
Alignment:
| Q |
9 |
acatcatcaatatccgaagattttag---ctgcgatgacatgtcttccccaccagacatcattgacatggctgcttgcatttgatcaaggtccatttccg |
105 |
Q |
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| T |
807036 |
acatcatcaatatccgaagattttagaccctgcgacgacatgtcttccccaccagacatcattgacatggctgcttgcatttgatcaaggtccatttccg |
806937 |
T |
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| Q |
106 |
gttcttcaataatcgtctcgggtgctttgaacagatctccctctacaaacaaatcaaattctgacatcgcagatgattggacaaggtcactctgcattaa |
205 |
Q |
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| T |
806936 |
gttcttcaataatcgtctcgggtgctttgaacagatctccctctacaaacaaatcaaattctgacatcgcagatgattgaacaaggtcactctgcattaa |
806837 |
T |
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| Q |
206 |
aacacggtataaaggatcagttaacaaagaattatagaatgacaaaagacata |
258 |
Q |
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| T |
806836 |
aacacagtataaaggatcagttaacaaagaattatagaatgacaaaagacata |
806784 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 41548232 - 41548392
Alignment:
| Q |
47 |
gtcttccccaccagacatcattgacatggctgcttgcatttgatcaaggtccatttccggttcttcaataatcgtctcgggtgctttgaacagatctccc |
146 |
Q |
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| T |
41548232 |
gtcttcgccacaagatatcattgagatggctgctgtcatgggatcaaggtcaatgcccgactcttcgatcatcggttcgggtgctttgaacagatctccc |
41548331 |
T |
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| Q |
147 |
tctacaaacaaatcaaattctgacatcgcagatgattggacaaggtcactctgcattaaaa |
207 |
Q |
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| T |
41548332 |
tctgctgcaaaatcatattcggacattgcagaaaactgaacaaggtcactctgcattaaaa |
41548392 |
T |
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