View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18396_low_29 (Length: 208)
Name: NF18396_low_29
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18396_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 30724990 - 30724810
Alignment:
| Q |
12 |
cacagagtaaaagaaagaagacacgagttgctgat-accaatttggttttatgtatgggaggtcgaccatgaaagaaatccatttactacgatgtgtgat |
110 |
Q |
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|||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30724990 |
cacaaagtaaaagaaaggagacacgagttactgatcaccaatttggttttatgtatgggaggtcgaccatgaaagcaatccatttactacgatgtgtgat |
30724891 |
T |
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| Q |
111 |
ggatcaatactggataaaaaatacttgcacttagttttcataaatttagggaaatcatgtgagagagatgtgcctagaaat |
191 |
Q |
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| T |
30724890 |
ggatcaatactggataaaaaagacttgcacttagttttcataaatttagggaaatcatgtgagagagatgtgcctagaaat |
30724810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 51448910 - 51448776
Alignment:
| Q |
22 |
aagaaagaagacacgagttgctgata-ccaatttggttttatgtatgggaggtcgaccatgaaagaaatccatttactacgatgtgtgatggatcaata- |
119 |
Q |
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||||||| |||| |||||| | |||| ||||||||||||||| |||||||||||| ||| ||| |||| ||||||| ||| | |||||||| | ||| |
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| T |
51448910 |
aagaaaggagactcgagttacggataaccaatttggttttatacctgggaggtcgactatggaagcaatctatttacttcgacgcgtgatggagcgatat |
51448811 |
T |
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| Q |
120 |
---ctggataaaaaatacttgcacttagttttcat |
151 |
Q |
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|||||||||| ||||||||||||||||||| |
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| T |
51448810 |
cggacggataaaaaagacttgcacttagttttcat |
51448776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 36651075 - 36651209
Alignment:
| Q |
22 |
aagaaagaagacacgagttgctgata-ccaatttggttttatgtatgggaggtcgaccatgaaagaaatccatttactacgatgtgtgatggatcaata- |
119 |
Q |
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| T |
36651075 |
aagaaaggagactcgagttacggataaccaatttggttttatgtctgggaggtcgattatggaagcaatctacttacttcgacgcgtgatggagcgatat |
36651174 |
T |
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| Q |
120 |
---ctggataaaaaatacttgcacttagttttcat |
151 |
Q |
| |
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|||||||||| ||||||||||||||||||| |
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| T |
36651175 |
cggacggataaaaaagacttgcacttagttttcat |
36651209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 48623728 - 48623594
Alignment:
| Q |
22 |
aagaaagaagacacgagttgctgata-ccaatttggttttatgtatgggaggtcgaccatgaaagaaatccatttactacgatgtgtgatggatcaata- |
119 |
Q |
| |
|
|||||||||||| |||||| | |||| |||||||||||||||| |||||||||||| ||| ||| |||| | ||| | ||| | |||||||| | ||| |
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| T |
48623728 |
aagaaagaagactcgagttacagataaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttagttcgacgcgtgatggagcgatat |
48623629 |
T |
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| Q |
120 |
---ctggataaaaaatacttgcacttagttttcat |
151 |
Q |
| |
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|||||||||| ||||||||||||||||||| |
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|
| T |
48623628 |
aggacggataaaaaagacttgcacttagttttcat |
48623594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 452817 - 452683
Alignment:
| Q |
22 |
aagaaagaagacacgagttgctgata-ccaatttggttttatgtatgggaggtcgaccatgaaagaaatccatttactacgatgtgtgatggatcaata- |
119 |
Q |
| |
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||||||| |||| |||||| | |||| |||||||||||||||| |||||||||||| ||| ||| |||| | ||||| ||| | |||||||| | ||| |
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| T |
452817 |
aagaaaggagactcgagttacggataaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcgacgcgtgatggagcgatat |
452718 |
T |
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| Q |
120 |
---ctggataaaaaatacttgcacttagttttcat |
151 |
Q |
| |
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|||||||||| ||||||||||||||||||| |
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| T |
452717 |
cggacggataaaaaagacttgcacttagttttcat |
452683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 8179874 - 8179943
Alignment:
| Q |
22 |
aagaaagaagacacgagttgctgata-ccaatttggttttatgtatgggaggtcgaccatgaaagaaatc |
90 |
Q |
| |
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||||||| |||| |||||| | |||| |||||||||||||||| |||||||||||| ||||||| |||| |
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| T |
8179874 |
aagaaaggagactcgagttacggataaccaatttggttttatgcctgggaggtcgactatgaaagcaatc |
8179943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 49348603 - 49348469
Alignment:
| Q |
22 |
aagaaagaagacacgagttgctgata-ccaatttggttttatgtatgggaggtcgaccatgaaagaaatccatttactacgatgtgtgatggatcaata- |
119 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||||| |||||||||||| ||| ||| |||| | ||||| ||| | |||||||| | ||| |
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| T |
49348603 |
aagaaagaagactcgagttatggataaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcgacgcgtgatggagcgatat |
49348504 |
T |
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| Q |
120 |
---ctggataaaaaatacttgcacttagttttcat |
151 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
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|
| T |
49348503 |
cggacggataaaaaagacttgcacttagttttcat |
49348469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 20318072 - 20318212
Alignment:
| Q |
22 |
aagaaagaagacacgagttgctgata-ccaatttggttttatgtatgggaggtcgaccatgaaagaaatccatttactacgatgtgtgatggatcaata- |
119 |
Q |
| |
|
||||||| |||| |||||| | |||| |||||||||||||||| |||||||||||| ||| ||| |||| | ||||| ||| | |||||||| | ||| |
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| T |
20318072 |
aagaaaggagactcgagttacagataaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcgacgcgtgatggagcgatat |
20318171 |
T |
|
| Q |
120 |
---ctggataaaaaatacttgcacttagttttcataaattt |
157 |
Q |
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||||||| || ||||||||||||||||||| ||||| |
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| T |
20318172 |
cggacggataaataagacttgcacttagttttcattaattt |
20318212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 76
Target Start/End: Complemental strand, 5260423 - 5260394
Alignment:
| Q |
47 |
accaatttggttttatgtatgggaggtcga |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
5260423 |
accaatttggttttatgtatgggaggtcga |
5260394 |
T |
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