View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18396_low_3 (Length: 634)

Name: NF18396_low_3
Description: NF18396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18396_low_3
NF18396_low_3
[»] chr3 (15 HSPs)
chr3 (57-617)||(36602599-36603152)
chr3 (57-287)||(15242979-15243209)
chr3 (57-287)||(15203958-15204188)
chr3 (57-208)||(12901352-12901506)
chr3 (57-283)||(3024466-3024691)
chr3 (66-255)||(23088910-23089099)
chr3 (57-279)||(16841222-16841444)
chr3 (61-168)||(9860766-9860872)
chr3 (57-123)||(1694219-1694285)
chr3 (57-123)||(36639617-36639683)
chr3 (61-168)||(3750257-3750363)
chr3 (57-121)||(10848287-10848351)
chr3 (1-39)||(16853063-16853101)
chr3 (250-286)||(3750432-3750468)
chr3 (79-123)||(4073143-4073187)
[»] chr8 (17 HSPs)
chr8 (64-283)||(13770713-13770933)
chr8 (3-285)||(22282161-22282443)
chr8 (57-121)||(15604524-15604588)
chr8 (57-121)||(15612875-15612939)
chr8 (64-204)||(9554990-9555128)
chr8 (57-155)||(24942277-24942377)
chr8 (64-163)||(31247561-31247659)
chr8 (57-210)||(21687118-21687269)
chr8 (57-210)||(21691442-21691593)
chr8 (61-123)||(1565556-1565618)
chr8 (224-285)||(15604360-15604421)
chr8 (224-285)||(15612711-15612772)
chr8 (1-39)||(7999755-7999793)
chr8 (1-39)||(18574072-18574110)
chr8 (1-42)||(10532844-10532885)
chr8 (1-50)||(24033861-24033910)
chr8 (1-89)||(41280864-41280952)
[»] chr5 (8 HSPs)
chr5 (58-286)||(31477484-31477713)
chr5 (57-211)||(23927192-23927345)
chr5 (61-121)||(31022477-31022537)
chr5 (57-119)||(23166881-23166943)
chr5 (2-65)||(38608348-38608411)
chr5 (1-39)||(19329979-19330017)
chr5 (1-39)||(41037700-41037738)
chr5 (3-39)||(28068080-28068116)
[»] chr2 (6 HSPs)
chr2 (136-285)||(19026268-19026417)
chr2 (60-285)||(15327875-15328100)
chr2 (177-286)||(25881127-25881236)
chr2 (64-121)||(25881043-25881100)
chr2 (1-39)||(42534177-42534215)
chr2 (1-89)||(25133988-25134076)
[»] chr6 (6 HSPs)
chr6 (57-286)||(7099337-7099567)
chr6 (57-286)||(8795063-8795293)
chr6 (139-285)||(12936411-12936557)
chr6 (57-211)||(31344292-31344444)
chr6 (61-285)||(7412216-7412436)
chr6 (57-123)||(15933564-15933630)
[»] chr1 (10 HSPs)
chr1 (57-285)||(16517284-16517512)
chr1 (60-205)||(18732304-18732447)
chr1 (57-285)||(41438503-41438733)
chr1 (61-270)||(31066430-31066641)
chr1 (59-211)||(23933788-23933939)
chr1 (57-121)||(170689-170753)
chr1 (57-123)||(14746792-14746858)
chr1 (185-283)||(16869834-16869932)
chr1 (223-285)||(52193469-52193531)
chr1 (59-168)||(24106919-24107027)
[»] scaffold0023 (1 HSPs)
scaffold0023 (57-280)||(87259-87482)
[»] chr7 (4 HSPs)
chr7 (57-285)||(5632743-5632971)
chr7 (152-285)||(1855534-1855667)
chr7 (57-105)||(1860829-1860877)
chr7 (251-287)||(24786829-24786865)
[»] chr4 (11 HSPs)
chr4 (58-280)||(53446503-53446725)
chr4 (59-210)||(13033697-13033848)
chr4 (59-216)||(16643602-16643755)
chr4 (64-211)||(7865609-7865756)
chr4 (64-211)||(7866773-7866920)
chr4 (59-167)||(16238382-16238488)
chr4 (3-121)||(34845514-34845632)
chr4 (1-39)||(12885387-12885425)
chr4 (1-39)||(45313253-45313291)
chr4 (1-89)||(10985768-10985856)
chr4 (4-40)||(17282548-17282584)
[»] scaffold1401 (1 HSPs)
scaffold1401 (59-167)||(809-915)
[»] scaffold0234 (1 HSPs)
scaffold0234 (57-123)||(982-1048)
[»] scaffold0233 (1 HSPs)
scaffold0233 (66-119)||(16113-16166)
[»] scaffold0058 (2 HSPs)
scaffold0058 (1-89)||(1665-1753)
scaffold0058 (1-42)||(15469-15510)
[»] scaffold0213 (1 HSPs)
scaffold0213 (234-289)||(24403-24458)
[»] scaffold0280 (1 HSPs)
scaffold0280 (250-288)||(1345-1383)


Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 57 - 617
Target Start/End: Original strand, 36602599 - 36603152
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctactt 156  Q
    ||||||||||||||||||||  |||||||||||||||||||||| |||||| || |||||||||||||  ||||||||||||||||||||||||||||||    
T  36602599 acggctctgcattcacccactgctataaataggaggctcctcgcagcctccaagatagaatctcttttccctctaaaaccctcattctgaacctctactt 36602698  T
Q  157 acttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcacc 256  Q
    ||||||||||||| || |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  36602699 acttgagcgtcgcagtgtctgcaggtacacaccccccattcggtccaacgctcaccagaatacttttaccaccgtaaaccaccgcatttaaccaaacacc 36602798  T
Q  257 gacagccaccttctaatcaagtacgatcaataagtttctatcctatcaggtt-atttcaagttttcaacaactcttttatttttagtggaaaaataaaat 355  Q
    |||| ||||||||||||        |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36602799 gacaaccaccttctaat--------atcaatgagtttctatcctatcaggtttatttcaagttttcaacaactcttttatttttagtggaaaaataaaat 36602890  T
Q  356 acttacattttcaattatagcggaaaaataaaatattacattttcaaggttgatgaatgaactatgaagggcttggagcttaaaaagttaaagcatccac 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36602891 acttacattttcaattatagcggaaaaataaaatattacattttcaaggttgatgaatgaactatgcagggcttggagcttaaaaagttaaagcatccac 36602990  T
Q  456 gcaattattacaattttacagatcataaatgacaaaatatttacattttacttttacagacttaaatacaatgttgattcagctaaccaataactaacaa 555  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36602991 acaattattacaattttacagatcataaatgacaaaatatttacattttacttttacagacttaaatacaatgttgattcagctaaccaataactaacaa 36603090  T
Q  556 tgtacatttaacctcactctaatcaagtgaaaacaggacaaccttgaacctcaaatcctttg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36603091 tgtacatttaacctcactctaatcaagtgaaaacaggacaaccttgaacctcaaatcctttg 36603152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 57 - 287
Target Start/End: Original strand, 15242979 - 15243209
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccc-tcattctgaacctctact 155  Q
    ||||||||||||||||||||| ||||||||| |||| ||||| | |||||| ||||||||||||||||   || ||||||| ||||| ||||||||||||    
T  15242979 acggctctgcattcacccacctctataaatatgaggttcctcacagcctccaaggtagaatctcttttccatccaaaacccctcattatgaacctctact 15243078  T
Q  156 tacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcac 255  Q
    |||||||||||||  || |  |||||| |||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||||| |||||||||     
T  15243079 tacttgagcgtcggagtgtctgcaggtacacacccc-cattcggtccaacgctcaccggaatactatcaccaccgtgaaccaccgcatttaaccaagcat 15243177  T
Q  256 cgacagccaccttctaatcaagtacgatcaat 287  Q
    || ||||||||||||||||| ||| |||||||    
T  15243178 cggcagccaccttctaatcaggtatgatcaat 15243209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 57 - 287
Target Start/End: Original strand, 15203958 - 15204188
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaa-ccctcattctgaacctctact 155  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |   ||||| ||||||||||||||||   || |||| |||||||||||||||||||||    
T  15203958 acggctctgcattcacccacctctataaatatgaggctcctggaaacctccaaggtagaatctcttttccatccaaaacccctcattctgaacctctact 15204057  T
Q  156 tacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcac 255  Q
    ||||||||||||   || |  |||| | |||| ||||||||||||||||||||||   ||||||| | ||||||||||||||||||||| |||||||||     
T  15204058 tacttgagcgtcagagtgtctgcagctacaca-cccccattcggtccaacgctcattggaatactatcaccaccgtgaaccaccgcatttaaccaagcat 15204156  T
Q  256 cgacagccaccttctaatcaagtacgatcaat 287  Q
    || |||||||||||| |||| ||| |||||||    
T  15204157 cggcagccaccttctgatcaggtatgatcaat 15204188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 57 - 208
Target Start/End: Original strand, 12901352 - 12901506
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaa---ccctcattctgaacctcta 153  Q
    |||| |||||||||||||||| |||||||||||||||||||||| |||||  ||| | ||||||||||  ||||||||   |||||||||  ||||||||    
T  12901352 acggttctgcattcacccacctctataaataggaggctcctcgcagcctcgaaggcataatctcttttcactctaaaacccccctcattcataacctcta 12901451  T
Q  154 cttacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgct 208  Q
    |||||||||||||||  || |  |||||| ||||| |||||||||||||||||||    
T  12901452 cttacttgagcgtcggagtgtctgcaggtacacacaccccattcggtccaacgct 12901506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 57 - 283
Target Start/End: Complemental strand, 3024691 - 3024466
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaa--ccctcattctgaacctctac 154  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||| |||||| ||||||||||| | ||  |||| |||  ||| |||| |||||||||||    
T  3024691 acggctctggattcaccaacctctataaataggaggctcctcgcagcctccaaggtagaatct-tcttcactcttaaactcccccattttgaacctctac 3024593  T
Q  155 ttacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagca 254  Q
    | |||||||| ||   || |  ||| || |||||||  ||||| ||||| | ||||||||| | || | ||||||||  |||||| | || |||||||||    
T  3024592 tgacttgagcatcagggtgtctgcatgtacacacccatcattcagtccagcactcaccagagttctctcaccaccgt--accaccactttcaaccaagca 3024495  T
Q  255 ccgacagccaccttctaatcaagtacgat 283  Q
    ||| |||||||||||| ||||||||||||    
T  3024494 ccggcagccaccttctgatcaagtacgat 3024466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 66 - 255
Target Start/End: Original strand, 23088910 - 23089099
Alignment:
Q  66 cattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctc-attctgaacctctacttacttgagc 164  Q
    |||||||| ||| ||||||||||||||||||| |  |||| | |||||||||||||||   |||| ||||||   ||||| |||||||||| ||||||||    
T  23088910 cattcacctacctctataaataggaggctcctggtagcctacaaggtagaatctctttca-ctctcaaaccccatattctaaacctctactgacttgagc 23089008  T
Q  165 gtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcac 255  Q
     |||  || || ||| || ||||  ||| ||||||||||||||||||| ||| ||||| ||||||||||||||  ||||||||||||||||    
T  23089009 atcggagtgtttgcatgtacacataccctattcggtccaacgctcaccggaacactttcaccaccgtgaaccattgcattgaaccaagcac 23089099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 279
Target Start/End: Original strand, 16841222 - 16841444
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctactt 156  Q
    |||||||||||||||||| || |||||||||| |||||| |||| |||||| ||||||||||||      |||| |||||| ||||||||| |||||||     
T  16841222 acggctctgcattcaccctcctctataaatagaaggctcatcgcagcctccaaggtagaatctc-acacactctcaaacccccattctgaa-ctctactg 16841319  T
Q  157 acttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcacc-agaatac-ttttaccaccgtgaaccaccgcattgaaccaagca 254  Q
    ||||||||||||  || |  | |||| |||||| |||||||||||||||||||||| | | |||     ||||| ||||||||||||||| || | |||     
T  16841320 acttgagcgtcggagtgtctgtaggtacacacctcccattcggtccaacgctcaccgaaagtacaaacaaccactgtgaaccaccgcattcaatccagcg 16841419  T
Q  255 ccgacagccaccttctaatcaagta 279  Q
    |||||| ||||||||| ||||||||    
T  16841420 ccgacaaccaccttctgatcaagta 16841444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 9860766 - 9860872
Alignment:
Q  61 ctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttactt 160  Q
    ||||||||||||||||| |||||||||| || |||| ||| |||||| ||||| |||||||||    || ||||||||||||||||||||||||| ||||    
T  9860766 ctctgcattcacccacctctataaatagaagactccccgcagcctccaaggtataatctctttcacttc-aaaaccctcattctgaacctctactgactt 9860864  T
Q  161 gagcgtcg 168  Q
    ||||||||    
T  9860865 gagcgtcg 9860872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 1694219 - 1694285
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttt 123  Q
    |||||||||||||||||||||||||||||||| ||||||||||  |||||| ||  |||||||||||    
T  1694219 acggctctgcattcacccaccactataaatagcaggctcctcgtagcctccaagagagaatctcttt 1694285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 36639683 - 36639617
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttt 123  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||| |||||  ||||||||| |||||    
T  36639683 acggctctgcattcacccacctctataaataggagcctcatcgcagcctctaaggtagaatttcttt 36639617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 3750257 - 3750363
Alignment:
Q  61 ctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttactt 160  Q
    |||| |||||||||||| ||||| | | |||| ||||||| |||||| |||||||||||||||    ||| |||||| ||||||  ||||||||| ||||    
T  3750257 ctcttcattcacccacctctatataaatgaggttcctcgcagcctccaaggtagaatctctttcacttct-aaacccccattcttgacctctactgactt 3750355  T
Q  161 gagcgtcg 168  Q
    ||||||||    
T  3750356 gagcgtcg 3750363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 10848287 - 10848351
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctct 121  Q
    |||||||||||||||||||||  |||||||||||||||  |||| |||||   ||||||||||||    
T  10848287 acggctctgcattcacccacctttataaataggaggcttatcgcagcctcaagggtagaatctct 10848351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16853063 - 16853101
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagag 39  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  16853063 ctggcggttacacttcccacgatttcgtaaccgccagag 16853101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 3750432 - 3750468
Alignment:
Q  250 aagcaccgacagccaccttctaatcaagtacgatcaa 286  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  3750432 aagcaccgacagccaccatctaatcaggtacgatcaa 3750468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 4073143 - 4073187
Alignment:
Q  79 ctataaataggaggctcctcgccgcctcccaggtagaatctcttt 123  Q
    |||||||||||||||||||||  |||| | |||||||||||||||    
T  4073143 ctataaataggaggctcctcgaagccttcaaggtagaatctcttt 4073187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 64 - 283
Target Start/End: Original strand, 13770713 - 13770933
Alignment:
Q  64 tgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctctttt-ttctctaaaaccctcattctgaacctctacttacttga 162  Q
    |||||||||||||| ||||||||||||| || ||||| |||||| |||||||||||||||  ||||| ||| ||| |||||| |||||||||| ||||||    
T  13770713 tgcattcacccacctctataaataggagtcttctcgcagcctccaaggtagaatctctttcattctc-aaaccccccattctaaacctctactgacttga 13770811  T
Q  163 gcgtcgccgttttcgcaggtgcacaccccc-cattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcaccgacag 261  Q
    ||||||  || |  ||| || ||| ||||  ||||||||||||||||||||| ||| |||| |||| |||||||||||||||| ||| || ||||||||     
T  13770812 gcgtcggagtgtctgcaagtacacgccccttcattcggtccaacgctcaccataattctttcaccatcgtgaaccaccgcattaaacaaaacaccgacaa 13770911  T
Q  262 ccaccttctaatcaagtacgat 283  Q
    ||||||||| |||| |||||||    
T  13770912 ccaccttcttatcatgtacgat 13770933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 22282161 - 22282443
Alignment:
Q  3 ggcggttacacttcccaagaattcgtaaccgccagagtcaagggtgcccccgccacggctctgcattcacccaccactataaataggaggctcctcgccg 102  Q
    |||| ||||||||| ||||| |||||||||||||||  || | |||||    | ||||||||||||| ||| ||| ||||||||||||||||||||||      
T  22282161 ggcgattacacttctcaagatttcgtaaccgccagacacacgtgtgccattacaacggctctgcatttaccaacctctataaataggaggctcctcgcaa 22282260  T
Q  103 cctcccaggtagaatctcttttttctctaaaa-ccctcattctgaacctctacttacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtc 201  Q
    ||||| ||  ||||| ||| |   |||| ||| ||||||||||||||||||||| |||||||||||   || |  |||||| |||||| ||||||||||     
T  22282261 cctccaagtgagaatatctatca-ctctcaaatccctcattctgaacctctactgacttgagcgtcagagtgtctgcaggtacacaccacccattcggtt 22282359  T
Q  202 caacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcaccgacagccaccttctaatcaagtacgatca 285  Q
    ||||||||||   | || | | ||| || ||||||||| |||| ||  ||| |||| |||||||||||| || | |||||||||    
T  22282360 caacgctcactgaagtattctcacctccatgaaccaccacattaaagaaagaaccggcagccaccttctgattaggtacgatca 22282443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 15604588 - 15604524
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctct 121  Q
    ||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||    
T  15604588 acggctctgcattcacccacctctataaataggaggctccttgcagcctccaaggtagaatctct 15604524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 15612939 - 15612875
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctct 121  Q
    ||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||    
T  15612939 acggctctgcattcacccacctctataaataggaggctccttgcagcctccaaggtagaatctct 15612875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 9554990 - 9555128
Alignment:
Q  64 tgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttacttgag 163  Q
    |||||| ||||||| |||||||||||||||||||||| |||||| |||| ||||||| |    |||| |||||| ||||||||| ||||||| |||||||    
T  9554990 tgcatttacccacctctataaataggaggctcctcgcagcctccaaggttgaatctc-tcacactctcaaacccccattctgaa-ctctactgacttgag 9555087  T
Q  164 cgtcgccgttttcgcaggtgcacaccccccattcggtccaa 204  Q
    |||||  || |  |||||| |||||||||| || |||||||    
T  9555088 cgtcggagtgtatgcaggtacacaccccccttttggtccaa 9555128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 24942377 - 24942277
Alignment:
Q  57 acggctctgcattcacccaccac---tataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctcta 153  Q
    ||||||||||||||||||||| |   ||||||||||||| |||||||  ||||| |||||||||||| |||  |||| |||||| |||||| ||||||||    
T  24942377 acggctctgcattcacccacctcctctataaataggaggatcctcgcatcctccaaggtagaatctc-tttcactctcaaacccccattctaaacctcta 24942279  T
Q  154 ct 155  Q
    ||    
T  24942278 ct 24942277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 31247561 - 31247659
Alignment:
Q  64 tgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttacttgag 163  Q
    |||| ||||||||| ||||||||| || ||||||||| |||||| |||||||||||||||    ||| || ||| ||||||||||||||||| |||||||    
T  31247561 tgcactcacccacctctataaataagaagctcctcgcagcctccaaggtagaatctctttcacttct-aatcccccattctgaacctctactgacttgag 31247659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 21687269 - 21687118
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctactt 156  Q
    |||||||||||||||||||||  || ||||||||||||||| ||  ||||| |||||||||||| |    |||| |||||| |||||||||  ||||||     
T  21687269 acggctctgcattcacccacctatacaaataggaggctccttgcaacctccaaggtagaatctc-tcacactctcaaacccccattctgaa-atctacta 21687172  T
Q  157 acttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctca 210  Q
    | ||||||||||   |    |||||| |||||||| ||||||||||||||||||    
T  21687171 atttgagcgtcgaattgcctgcaggtacacacccctcattcggtccaacgctca 21687118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 21691593 - 21691442
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctactt 156  Q
    |||||||||||||||||||||  || ||||||||||||||| ||  ||||| |||||||||||| |    |||| |||||| |||||||||  ||||||     
T  21691593 acggctctgcattcacccacctatacaaataggaggctccttgcaacctccaaggtagaatctc-tcacactctcaaacccccattctgaa-atctacta 21691496  T
Q  157 acttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctca 210  Q
    | ||||||||||   |    |||||| |||||||| ||||||||||||||||||    
T  21691495 atttgagcgtcgaattgcctgcaggtacacacccctcattcggtccaacgctca 21691442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 1565556 - 1565618
Alignment:
Q  61 ctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttt 123  Q
    |||| |||||||||||| ||||||||| |||||| ||| | |||||| |||||||||||||||    
T  1565556 ctctacattcacccacctctataaatatgaggcttctcacagcctccaaggtagaatctcttt 1565618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 15604421 - 15604360
Alignment:
Q  224 accaccgtgaaccaccgcattgaaccaagcaccgacagccaccttctaatcaagtacgatca 285  Q
    ||||||||||||||| ||||| |||| ||| ||||||||||||||||  ||| |||||||||    
T  15604421 accaccgtgaaccactgcatttaacccagcgccgacagccaccttctggtcaggtacgatca 15604360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 15612772 - 15612711
Alignment:
Q  224 accaccgtgaaccaccgcattgaaccaagcaccgacagccaccttctaatcaagtacgatca 285  Q
    ||||||||||||||| ||||| |||| ||| ||||||||||||||||  ||| |||||||||    
T  15612772 accaccgtgaaccactgcatttaacccagcgccgacagccaccttctggtcaggtacgatca 15612711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 7999793 - 7999755
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagag 39  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  7999793 ctggcggttacacttcccacgatttcgtaaccgccagag 7999755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18574072 - 18574110
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagag 39  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  18574072 ctggcggttacacttcccacgatttcgtaaccgccagag 18574110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10532844 - 10532885
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagagtca 42  Q
    ||||||||||||||| ||| || |||||||||||||||||||    
T  10532844 ctggcggttacactttccacgatttcgtaaccgccagagtca 10532885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24033910 - 24033861
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagagtcaagggtgcc 50  Q
    ||||||||||||||| ||| || ||||||||||||| ||||||| |||||    
T  24033910 ctggcggttacactttccacgatttcgtaaccgccaaagtcaagtgtgcc 24033861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41280864 - 41280952
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagagtcaagggtgcccccgccacggctctgcattcacccaccactataaatagg 89  Q
    ||||||||||||||||||| || || |||||| ||||||||| | |||||    | ||||||||||| ||  ||||| |||||||||||    
T  41280864 ctggcggttacacttcccacgattttgtaacccccagagtcaggtgtgccattacaacggctctgcagtcctccacctctataaatagg 41280952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 58 - 286
Target Start/End: Original strand, 31477484 - 31477713
Alignment:
Q  58 cggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccc-tcattctgaacctctactt 156  Q
    |||||||||||||||||||| |||| ||||||||| | || || |||||| |||||||||   |||   |||| |||||| ||||| |||||||||||||    
T  31477484 cggctctgcattcacccacctctattaataggaggttacttgcagcctccaaggtagaataaatttca-ctctcaaacccctcattttgaacctctactt 31477582  T
Q  157 acttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaa-tacttttaccaccgtgaaccaccgcattgaaccaagcac 255  Q
    ||||||||||||  || |  |||||| |||| |||||||||||| ||||||||||| ||| |||   ||||||||||||| ||| |||| ||||||||||    
T  31477583 acttgagcgtcggagtgtctgcaggtacacaacccccattcggttcaacgctcaccggaagtacaactaccaccgtgaacaaccacattcaaccaagcac 31477682  T
Q  256 cgacagccaccttctaatcaagtacgatcaa 286  Q
     | |||||||||||| |||| ||| ||||||    
T  31477683 tggcagccaccttctgatcaggtatgatcaa 31477713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 23927192 - 23927345
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccc-tcattctgaacctctact 155  Q
    |||||||||||||||||||||  |||||||||||||||||  || |||||| ||||||||| || |||  |||| |||||| |||||  |||||||||||    
T  23927192 acggctctgcattcacccacctttataaataggaggctccctgcagcctccaaggtagaatatc-tttcactctcaaacccttcattacgaacctctact 23927290  T
Q  156 tacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcac 211  Q
     ||||||||||||  || |  |||||| || | |||| ||||||||||||||||||    
T  23927291 gacttgagcgtcggagtgtctgcaggtaca-aaccccaattcggtccaacgctcac 23927345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 31022477 - 31022537
Alignment:
Q  61 ctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctct 121  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||||    
T  31022477 ctctgcattcacccacctctataaataggaggctcctcgcaacctccaaggtagaatctct 31022537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 23166943 - 23166881
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatct 119  Q
    |||||||| |||||||||||| |||||||||| |||||||||||  ||||| |||||||||||    
T  23166943 acggctcttcattcacccacctctataaatagaaggctcctcgcaacctccaaggtagaatct 23166881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 38608411 - 38608348
Alignment:
Q  2 tggcggttacacttcccaagaattcgtaaccgccagagtcaagggtgcccccgccacggctctg 65  Q
    |||||||||||||||||| || |||||||||||||||| || | ||||| || | |||||||||    
T  38608411 tggcggttacacttcccacgatttcgtaaccgccagagccaggtgtgcctccacaacggctctg 38608348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19329979 - 19330017
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagag 39  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  19329979 ctggcggttacacttcccacgatttcgtaaccgccagag 19330017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 41037700 - 41037738
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagag 39  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  41037700 ctggcggttacacttcccacgatttcgtaaccgccagag 41037738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 28068080 - 28068116
Alignment:
Q  3 ggcggttacacttcccaagaattcgtaaccgccagag 39  Q
    ||||||||||||||||| || ||||||||||||||||    
T  28068080 ggcggttacacttcccacgatttcgtaaccgccagag 28068116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 136 - 285
Target Start/End: Complemental strand, 19026417 - 19026268
Alignment:
Q  136 cctcattctgaacctctacttacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaac 235  Q
    |||||||||| |||||||||||||||||| |||  || | ||||||| |||||||||||||||||||||||||||||  | |||||| ||||||||||||    
T  19026417 cctcattctggacctctacttacttgagcatcggagtgtccgcaggtacacaccccccattcggtccaacgctcaccgtactactttcaccaccgtgaac 19026318  T
Q  236 caccgcattgaaccaagcaccgacagccaccttctaatcaagtacgatca 285  Q
    ||||||| | ||| |||||| |||||| ||||| | |||| |||| ||||    
T  19026317 caccgcaataaacaaagcactgacagctaccttatgatcaggtacaatca 19026268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 60 - 285
Target Start/End: Original strand, 15327875 - 15328100
Alignment:
Q  60 gctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctct-aaaaccctcattctgaacctctacttac 158  Q
    |||||||||||||||||| |||||||||  ||||||||||| |||||| ||||||||||| | ||  |||| ||| ||| ||||||||||||||||| ||    
T  15327875 gctctgcattcacccacctctataaatataaggctcctcgcagcctccaaggtagaatct-tcttcactctgaaaccccccattctgaacctctactgac 15327973  T
Q  159 ttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcaccga 258  Q
    ||||||||||  || |  |||||| ||| |||||| ||||||| | | |||||   |   || | |||||||||||| ||| | || |||||||||||||    
T  15327974 ttgagcgtcggagtgtctgcaggtacacccccccctttcggtctagcactcactcaagctctctcaccaccgtgaactaccaccttcaaccaagcaccga 15328073  T
Q  259 cagccaccttctaatcaagtacgatca 285  Q
     ||||||||||| |||| ||| |||||    
T  15328074 tagccaccttctgatcaggtaagatca 15328100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 25881127 - 25881236
Alignment:
Q  177 gcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcaccgacagccaccttctaatcaa 276  Q
    |||||| |||||||||||||||||||||| |||| | ||||||| | |||||| |||||| ||||||| ||||||||||||||| |||||||||  |||     
T  25881127 gcaggtacacaccccccattcggtccaacactcatcggaatactatcaccaccatgaaccgccgcatttaaccaagcaccgacatccaccttctggtcag 25881226  T
Q  277 gtacgatcaa 286  Q
    ||||||||||    
T  25881227 gtacgatcaa 25881236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 25881043 - 25881100
Alignment:
Q  64 tgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctct 121  Q
    |||||||||||||| |||||||||||||||||||| |  | ||| |||||||||||||    
T  25881043 tgcattcacccacctctataaataggaggctcctcacaacttccaaggtagaatctct 25881100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42534177 - 42534215
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagag 39  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  42534177 ctggcggttacacttcccacgatttcgtaaccgccagag 42534215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25133988 - 25134076
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagagtcaagggtgcccccgccacggctctgcattcacccaccactataaatagg 89  Q
    ||||||||||||||| ||| || |||||||||||||||| || | ||||| |  | |||||||||||  |  ||||| |||||||||||    
T  25133988 ctggcggttacacttaccacgatttcgtaaccgccagagccaggtgtgccactacaacggctctgcagccctccacctctataaatagg 25134076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 57 - 286
Target Start/End: Original strand, 7099337 - 7099567
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctct-aaaaccctcattctgaacctctact 155  Q
    ||||||||||||||||||||| |||||||||||||||| |||||  ||||| ||||||| ||||||||  |||| ||| ||| |||| ||||||||||||    
T  7099337 acggctctgcattcacccacctctataaataggaggcttctcgcaacctccaaggtagattctcttttcactctcaaaccccccattatgaacctctact 7099436  T
Q  156 tacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcac 255  Q
     ||||||||||    || |  |||||| || || ||| |||||||| || ||||||   | |||| | |||||||||||||||| |||| ||  ||| ||    
T  7099437 gacttgagcgttagagtgtctgcaggtacatactcccaattcggtctaatgctcactgaagtactctcaccaccgtgaaccaccacattaaagaaagtac 7099536  T
Q  256 cgacagccaccttctaatcaagtacgatcaa 286  Q
    || |||||||||||| |||| ||||||||||    
T  7099537 cgccagccaccttctgatcatgtacgatcaa 7099567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 57 - 286
Target Start/End: Complemental strand, 8795293 - 8795063
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctct-aaaaccctcattctgaacctctact 155  Q
    ||||||||||||||||||||| |||||||||||||||| |||||  ||||| ||||||| ||||||||  |||| ||| ||| |||| ||||||||||||    
T  8795293 acggctctgcattcacccacctctataaataggaggcttctcgcaacctccaaggtagattctcttttcactctcaaaccccccattatgaacctctact 8795194  T
Q  156 tacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcac 255  Q
     ||||||||||    || |  |||||| || || ||| |||||||| || ||||||   | |||| | |||||||||||||||| |||| ||  ||| ||    
T  8795193 gacttgagcgttagagtgtctgcaggtacatactcccaattcggtctaatgctcactgaagtactctcaccaccgtgaaccaccacattaaagaaagtac 8795094  T
Q  256 cgacagccaccttctaatcaagtacgatcaa 286  Q
    || |||||||||||| |||| ||||||||||    
T  8795093 cgccagccaccttctgatcatgtacgatcaa 8795063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 12936411 - 12936557
Alignment:
Q  139 cattctgaacctctacttacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccac 238  Q
    ||||||||||||||||| ||||||||||||  || |  ||| ||||||||||  ||||||||||||||||||||  | |||| | |||||||||||||||    
T  12936411 cattctgaacctctactaacttgagcgtcggagtgtctgcaagtgcacacccttcattcggtccaacgctcaccgaagtactctcaccaccgtgaaccac 12936510  T
Q  239 cgcattgaaccaagcaccgacagccaccttctaatcaagtacgatca 285  Q
    |||||| ||  ||||||||  ||||||||||| |||| |||||||||    
T  12936511 cgcattaaagaaagcaccggtagccaccttctgatcaggtacgatca 12936557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 31344292 - 31344444
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctactt 156  Q
    ||||||||||||||||||||| |||||||||||||||||||| |  ||||| || |||||| || |  | |||| |||||| ||||||||| |||||||     
T  31344292 acggctctgcattcacccacctctataaataggaggctcctcacaacctccaagatagaatttc-tcatactctcaaacccccattctgaa-ctctactg 31344389  T
Q  157 acttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcac 211  Q
    ||||||||||||  || |  ||| || ||||||| ||||||||||||||||||||    
T  31344390 acttgagcgtcggagtgtatgcatgtacacacccgccattcggtccaacgctcac 31344444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 61 - 285
Target Start/End: Complemental strand, 7412436 - 7412216
Alignment:
Q  61 ctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttactt 160  Q
    ||||||||||||||||| |||| |||| |||||||||||| ||| || |||| ||||||| |||| |||| |||||| ||||||||| ||||||| ||||    
T  7412436 ctctgcattcacccacctctatgaataagaggctcctcgcagcc-ccaaggt-gaatctc-ttttactctcaaacccccattctgaa-ctctactgactt 7412341  T
Q  161 gagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcacc-agaatac-ttttaccaccgtgaaccaccgcattgaaccaagcaccga 258  Q
    ||||||||  || |  |||||| |||| |||||||||| ||||||| ||||| | |||||    ||||||||||||||||| |||  |||||||| |||     
T  7412340 gagcgtcggagtgtctgcaggtacaca-cccccattcgatccaacgttcaccgaaaatacaaactaccaccgtgaaccaccacatgcaaccaagc-ccgt 7412243  T
Q  259 cagccaccttctaatcaagtacgatca 285  Q
    |||| || ||||||||  |||||||||    
T  7412242 cagctactttctaatctggtacgatca 7412216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 15933564 - 15933630
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttt 123  Q
    |||||| |||||||||||||| ||||| | | |||||||||||| |||| | |||||||||||||||    
T  15933564 acggctatgcattcacccacctctatataaaagaggctcctcgcagccttcaaggtagaatctcttt 15933630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 57 - 285
Target Start/End: Complemental strand, 16517512 - 16517284
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctactt 156  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||||  ||||| |||||||||||| | || ||||||||||| ||||||||| |||||||     
T  16517512 acggctctgcatttacccacctctacaaataggaggctcctcgctacctccaaggtagaatctc-tcttactctaaaacccccattctgaa-ctctactg 16517415  T
Q  157 acttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaa-tac-ttttaccaccgtgaaccaccgcattgaaccaagca 254  Q
    |||||||||||    | |   ||| |||||||||||||||| |||||||||||||| ||| |||    ||||||||||||||||| |||| || | |||     
T  16517414 acttgagcgtcagaatgtctacagatgcacaccccccattcagtccaacgctcaccggaagtacacactaccaccgtgaaccaccacattcaatccagcg 16517315  T
Q  255 ccgacagccaccttctaatcaagtacgatca 285  Q
    |||||| ||| ||||| |||| |||||||||    
T  16517314 ccgacaaccatcttctgatcaggtacgatca 16517284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 18732447 - 18732304
Alignment:
Q  60 gctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttact 159  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||| |||| ||| ||| | || ||||||||||| ||||||||| ||||||| |||    
T  18732447 gctctgcattcacccacctctataaataggaggctcctcgcagcctccaaggttgaacctc-tcttactctaaaacccccattctgaa-ctctactgact 18732350  T
Q  160 tgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaac 205  Q
    ||||| |||  || |  |||||| ||||| ||||||||| ||||||    
T  18732349 tgagcatcgtagtgtctgcaggtacacactccccattcgatccaac 18732304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 57 - 285
Target Start/End: Complemental strand, 41438733 - 41438503
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctactt 156  Q
    |||||||| |||||||||||  ||||||||||||||||  |||| |||||| |||||||||||| | |  |||| |||||| |||||||||||||||||     
T  41438733 acggctctacattcacccacgtctataaataggaggcttttcgcagcctccgaggtagaatctc-tctcactctcaaacccccattctgaacctctactg 41438635  T
Q  157 acttgagcgtcgccgttttcgcaggtgcaca-ccccccattcggtccaacgctcaccagaatact--tttaccaccgtgaaccaccgcattgaaccaagc 253  Q
    |||| |||||||  || |  |||||  |||| ||||||||| ||||||||| ||||| |||   |    |||||| ||||||||||||||  |||| |||    
T  41438634 acttaagcgtcggagtgtctgcaggcacacatccccccatttggtccaacggtcaccggaagtataaactaccactgtgaaccaccgcatccaacctagc 41438535  T
Q  254 accgacagccaccttctaatcaagtacgatca 285  Q
    |||  |||||||||||| |||| |||||||||    
T  41438534 accagcagccaccttctgatcaggtacgatca 41438503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 61 - 270
Target Start/End: Original strand, 31066430 - 31066641
Alignment:
Q  61 ctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttt-tttctctaaaaccctcattctgaacctctacttact 159  Q
    |||| |||||||||||| |||||||||||||||||||| |  |||||  ||||||||||||||   |||| ||| ||||||||||||||||||||| |||    
T  31066430 ctctacattcacccacctctataaataggaggctcctcacaacctccagggtagaatctctttcactctc-aaacccctcattctgaacctctactgact 31066528  T
Q  160 tgagcgtcgccgttttcgcaggtgcacacccccc--attcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcaccg 257  Q
    |||||||||  || |  |||||| | | ||||||  ||||| |||||| |||||   | |||||| ||||||  ||||||||||||| ||  ||| || |    
T  31066529 tgagcgtcggagtgtctgcaggtacccccccccccaattcgatccaacactcacggtagtactttcaccacctggaaccaccgcattaaagaaagtactg 31066628  T
Q  258 acagccaccttct 270  Q
    |||||||| ||||    
T  31066629 acagccacattct 31066641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 23933788 - 23933939
Alignment:
Q  59 ggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttac 158  Q
    ||||||||||||||||||  |||||||||||||||||||||| || ||| ||||||||||| ||||   ||| ||||||  ||| |||||||||| | ||    
T  23933788 ggctctgcattcacccacttctataaataggaggctcctcgcagcttccaaggtagaatct-ttttcattctcaaacccctattttgaacctctattgac 23933886  T
Q  159 ttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcac 211  Q
    ||||||| ||  || |  |||||| ||||||| ||||||||| ||| ||||||    
T  23933887 ttgagcgacggagtgtctgcaggtacacaccctccattcggttcaatgctcac 23933939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 170689 - 170753
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctct 121  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||| |||||| |||||||||||||    
T  170689 acggctctgcattcatccacctctataaataggaggctcatcgcagcctccaaggtagaatctct 170753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 14746792 - 14746858
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttt 123  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||  ||| | |||||||||||||||    
T  14746792 acggctctgcattcacccacctctataaataagaggctcctcgcaaccttcaaggtagaatctcttt 14746858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 16869932 - 16869834
Alignment:
Q  185 acaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcaccgacagccaccttctaatcaagtacgat 283  Q
    ||||||| |||||||||||||||||||   | |||| | |||||| |||||||||||||| ||  ||||||||||| |||||||||||| | |||||||    
T  16869932 acacccctcattcggtccaacgctcactgaagtactctcaccaccatgaaccaccgcattaaagaaagcaccgacaaccaccttctaattaggtacgat 16869834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 52193469 - 52193531
Alignment:
Q  223 taccaccgtgaaccaccgcattgaaccaagcaccgacagccaccttctaatcaagtacgatca 285  Q
    |||||||||||||||||||||| || |||||||||| ||||||||||  |||| |||||||||    
T  52193469 taccaccgtgaaccaccgcattcaatcaagcaccgatagccaccttcagatcaggtacgatca 52193531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 168
Target Start/End: Original strand, 24106919 - 24107027
Alignment:
Q  59 ggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttac 158  Q
    ||||||||||||| ||||| ||||| | ||||||||| ||||  ||||| ||||||||| |||||    ||| |||||| ||||||  ||||||||| ||    
T  24106919 ggctctgcattcatccacctctatataaaggaggctcatcgcaacctccaaggtagaatttctttcacttct-aaacccccattcttgacctctactgac 24107017  T
Q  159 ttgagcgtcg 168  Q
    ||||||||||    
T  24107018 ttgagcgtcg 24107027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 57 - 280
Target Start/End: Complemental strand, 87482 - 87259
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaa-ccctcattctgaacctctact 155  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||  ||||  ||||||||||| | ||  |||||||| ||| |||| ||||||||||||    
T  87482 acggctctgcattcacccacctctataaataagaggctcctcgcaacctctaaggtagaatct-tcttcactctaaaaccccacattatgaacctctact 87384  T
Q  156 tacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcac 255  Q
     ||||||||||||  || || |||||| |||||||| |||||||||||  |||||    | | || | |||||| ||||||| | | ||  ||||||||     
T  87383 aacttgagcgtcggagtgtttgcaggtacacacccctcattcggtccagtgctcattgaagttctctcaccaccatgaaccaacacctttgaccaagcat 87284  T
Q  256 cgacagccaccttctaatcaagtac 280  Q
    ||||||||||||||| |||| ||||    
T  87283 cgacagccaccttctgatcaggtac 87259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 57 - 285
Target Start/End: Original strand, 5632743 - 5632971
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaacc--ctcattctgaacctctac 154  Q
    |||||||||||||||||| || |||||||||||| |  |||||| |||||| ||||||||||| ||||  |||  |||||  ||||||||||||||||||    
T  5632743 acggctctgcattcacccgcctctataaatagga-gaacctcgcagcctccaaggtagaatct-ttttcactcctaaacccactcattctgaacctctac 5632840  T
Q  155 ttacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagca 254  Q
    | |||||||||||   || |   | ||| ||||| ||| ||||||||||||||||||   | | || | |||||||||||||||| | || |||||||||    
T  5632841 tgacttgagcgtcagagtgtctaccggtacacacaccctattcggtccaacgctcactgaagttctctcaccaccgtgaaccaccactttcaaccaagca 5632940  T
Q  255 ccgacagccaccttctaatcaagtacgatca 285  Q
    ||| |||||||||||| |||| |||| ||||    
T  5632941 ccggcagccaccttctgatcaggtacaatca 5632971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 152 - 285
Target Start/End: Complemental strand, 1855667 - 1855534
Alignment:
Q  152 tacttacttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaa 251  Q
    ||||||||||||||| |  || |  |||||| ||| ||||||||||| ||||||||||||| ||| || || |||||| |||| |||  ||||  || ||    
T  1855667 tacttacttgagcgttggagtgtctgcaggtacactccccccattcgatccaacgctcaccggaacacattcaccaccatgaaacactccattatacaaa 1855568  T
Q  252 gcaccgacagccaccttctaatcaagtacgatca 285  Q
    ||||| ||| |||| |||| |||| |||||||||    
T  1855567 gcacctacaaccacattctgatcaggtacgatca 1855534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 1860877 - 1860829
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcct 105  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||| ||||    
T  1860877 acggctctgcatttacccacctctattaataggaggctcctcgcagcct 1860829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 24786829 - 24786865
Alignment:
Q  251 agcaccgacagccaccttctaatcaagtacgatcaat 287  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  24786829 agcaccgacagtcaccttctaatcaggtacgatcaat 24786865  T

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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 58 - 280
Target Start/End: Complemental strand, 53446725 - 53446503
Alignment:
Q  58 cggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctca-ttctgaacctctactt 156  Q
    ||||||| |||||||||||| |||||||||||| | | ||| | |||||| ||||||||||| ||||  |||| |||||| || |||||||| ||||||     
T  53446725 cggctctacattcacccacctctataaataggatgtttctcccagcctccaaggtagaatct-ttttcactctcaaacccccaattctgaacatctactg 53446627  T
Q  157 acttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaatacttttaccaccgtgaaccaccgcattgaaccaagcacc 256  Q
    |||||||  |||  || |  |||||| |||| ||||| ||| ||||||||||||| | | |||| | |||||||||||||||| |||| ||  |||||||    
T  53446626 acttgagtatcggagtgtctgcaggtacacatcccccgttcagtccaacgctcactaaagtactctcaccaccgtgaaccaccacattaaagaaagcacc 53446527  T
Q  257 gacagccaccttctaatcaagtac 280  Q
    | |||| ||||||| |||||||||    
T  53446526 ggcagctaccttctgatcaagtac 53446503  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 59 - 210
Target Start/End: Original strand, 13033697 - 13033848
Alignment:
Q  59 ggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccct-cattctgaacctctactta 157  Q
    |||||||| |||| |||||  |||||||||||||||  |||| |||||| |||||||||||||||   |||| ||||||  ||||||||||||||||| |    
T  13033697 ggctctgctttcagccacctttataaataggaggcttttcgcagcctccaaggtagaatctctttca-ctctgaaaccccacattctgaacctctactga 13033795  T
Q  158 cttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctca 210  Q
    ||||||||||   || |  |||||| |||||||| ||||||||||||||||||    
T  13033796 cttgagcgtcagagtgtctgcaggtacacacccctcattcggtccaacgctca 13033848  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 16643602 - 16643755
Alignment:
Q  59 ggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttac 158  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||| ||| |||||||| |    |||| |||||| | ||||||| ||||||| ||    
T  16643602 ggctctgcattcacccacatctataaataggaggctcctcgcagcctccaagggagaatctc-tcacactctcaaacccccgttctgaa-ctctactgac 16643699  T
Q  159 ttgagcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcaccagaa 216  Q
    |||||||||   || |  | ||||  ||||||||||||||||||||||||||| ||||    
T  16643700 ttgagcgtcagagtgtatgtaggt--acaccccccattcggtccaacgctcactagaa 16643755  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 7865609 - 7865756
Alignment:
Q  64 tgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctc-attctgaacctctacttacttga 162  Q
    |||||||||||||| |||||||||| |||||||   |  ||||| |||||||||||| |||  |||| |||||| | ||| |||||||||||| ||||||    
T  7865609 tgcattcacccacctctataaatagcaggctccctacaacctccaaggtagaatctc-tttcactctcaaaccccctattatgaacctctactgacttga 7865707  T
Q  163 gcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcac 211  Q
    || ||   || |  |||||| |||||||| |||||||||||||||||||    
T  7865708 gcttcagagtgtctgcaggtacacacccctcattcggtccaacgctcac 7865756  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 7866773 - 7866920
Alignment:
Q  64 tgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctc-attctgaacctctacttacttga 162  Q
    |||||||||||||| |||||||||| |||||||   |  ||||| |||||||||||| |||  |||| |||||| | ||| |||||||||||| ||||||    
T  7866773 tgcattcacccacctctataaatagcaggctccctacaacctccaaggtagaatctc-tttcactctcaaaccccctattatgaacctctactgacttga 7866871  T
Q  163 gcgtcgccgttttcgcaggtgcacaccccccattcggtccaacgctcac 211  Q
    || ||   || |  |||||| |||||||| |||||||||||||||||||    
T  7866872 gcttcagagtgtctgcaggtacacacccctcattcggtccaacgctcac 7866920  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 16238488 - 16238382
Alignment:
Q  59 ggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttac 158  Q
    ||||||||||||||| ||| ||||||||||||||||||| |  | |||| |||||||||||| |    |||| |||||||||||||||| ||||||| ||    
T  16238488 ggctctgcattcacctacctctataaataggaggctccttgtaggctccaaggtagaatctc-tcacactctcaaaccctcattctgaa-ctctactgac 16238391  T
Q  159 ttgagcgtc 167  Q
    |||||||||    
T  16238390 ttgagcgtc 16238382  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 34845514 - 34845632
Alignment:
Q  3 ggcggttacacttcccaagaattcgtaaccgccagagtcaagggtgcccccgccacggctctgcattcacccaccactataaataggaggctcctcgccg 102  Q
    ||||||||||||||||| || |||||||||| ||||  || | |||||    | ||| ||||||||||||||||| ||||| | ||| |||||||||| |    
T  34845514 ggcggttacacttcccacgatttcgtaaccgtcagacacatgtgtgccattacaacgactctgcattcacccacctctatataaagggggctcctcgcag 34845613  T
Q  103 cctcccaggtagaatctct 121  Q
     | || |||||||||||||    
T  34845614 tccccaaggtagaatctct 34845632  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12885425 - 12885387
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagag 39  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  12885425 ctggcggttacacttcccacgatttcgtaaccgccagag 12885387  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 45313291 - 45313253
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagag 39  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  45313291 ctggcggttacacttcccacgatttcgtaaccgccagag 45313253  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 10985768 - 10985856
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagagtcaagggtgcccccgccacggctctgcattcacccaccactataaatagg 89  Q
    ||||||||||||||||||| || ||||||||||| |||| || | |||||    | |||||||||||  || ||||| |||||||||||    
T  10985768 ctggcggttacacttcccacgatttcgtaaccgcgagagccaggtgtgccattacaacggctctgcagccatccacctctataaatagg 10985856  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 17282548 - 17282584
Alignment:
Q  4 gcggttacacttcccaagaattcgtaaccgccagagt 40  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  17282548 gcggttacacttcccacgaattcgtaaccgtcagagt 17282584  T

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Target: scaffold1401 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold1401
Description:

Target: scaffold1401; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 915 - 809
Alignment:
Q  59 ggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttttttctctaaaaccctcattctgaacctctacttac 158  Q
    ||||||||||||||| ||| ||||||||||||||||||| |  | |||| |||||||||||| |    |||| |||||||||||||||| ||||||| ||    
T  915 ggctctgcattcacctacctctataaataggaggctccttgtaggctccaaggtagaatctc-tcacactctcaaaccctcattctgaa-ctctactgac 818  T
Q  159 ttgagcgtc 167  Q
    |||||||||    
T  817 ttgagcgtc 809  T

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Target: scaffold0234 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 982 - 1048
Alignment:
Q  57 acggctctgcattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatctcttt 123  Q
    |||||||| ||||||||||||  |||||||| |||||||| | | |||||| |||||||||||||||    
T  982 acggctctacattcacccacctttataaataagaggctccccacagcctccaaggtagaatctcttt 1048  T

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Target: scaffold0233 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 16113 - 16166
Alignment:
Q  66 cattcacccaccactataaataggaggctcctcgccgcctcccaggtagaatct 119  Q
    |||||||| ||| |||||||||||||||||||||| |||||| ||||| |||||    
T  16113 cattcaccaacctctataaataggaggctcctcgcagcctccaaggtataatct 16166  T

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Target: scaffold0058 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1753 - 1665
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagagtcaagggtgcccccgccacggctctgcattcacccaccactataaatagg 89  Q
    ||||||||||||||||||| || |||||||||||||||| ||||  ||||    | |||||||||||  || ||||| |||||||||||    
T  1753 ctggcggttacacttcccacgatttcgtaaccgccagagccaagtatgccattacaacggctctgcagccatccacctctataaatagg 1665  T

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Target: scaffold0058; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15510 - 15469
Alignment:
Q  1 ctggcggttacacttcccaagaattcgtaaccgccagagtca 42  Q
    ||||||||||||||||||| || || ||||||||||||||||    
T  15510 ctggcggttacacttcccacgatttagtaaccgccagagtca 15469  T

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Target: scaffold0213 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 24403 - 24458
Alignment:
Q  234 accaccgcattgaaccaagcaccgacagccaccttctaatcaagtacgatcaataa 289  Q
    ||||||||||| |||||||||||| || ||| ||||| |||| |||||||||||||    
T  24403 accaccgcattaaaccaagcaccggcaaccatcttctgatcaggtacgatcaataa 24458  T

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Target: scaffold0280 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 1345 - 1383
Alignment:
Q  250 aagcaccgacagccaccttctaatcaagtacgatcaata 288  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  1345 aagcaccgacagtcaccttctaatcaggtacgatcaata 1383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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