View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18397_high_1 (Length: 502)
Name: NF18397_high_1
Description: NF18397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18397_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 2 - 485
Target Start/End: Original strand, 36934808 - 36935291
Alignment:
| Q |
2 |
acagatgggagtgactgaccttgaatgacataagcaactttagaggaatctgcataatgaggaagagcaaagccttgaggcttaagcacaaggcgaccag |
101 |
Q |
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| T |
36934808 |
acagatgggagtgactgaccttgaatgacataagcaactttagaggaatctgcataatgaggaagagcaaagccttgaggcttaagcacaaggcgaccag |
36934907 |
T |
|
| Q |
102 |
caccaacgttggttgaggctaacactggcatttgagaactcgaccaaacgtagtaactaccaccgtctccnnnnnnnnnnnnngaacaaaactaccaccg |
201 |
Q |
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| T |
36934908 |
caccaacgttggttgaggctaacactggcatttgagaactcgaccaaacgtagtaactaccaccgtctccttttattttttttgaacaaaactaccaccg |
36935007 |
T |
|
| Q |
202 |
tctccttcaaacaatgtttctgctgttttcgatgttaaatccaactccattttctctgttagtcccataataattaatagttacgtaagaaacaaaccaa |
301 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36935008 |
tctccttcaaacaatgtttctgctgttttcggtgttaaatccaactccattttttctgttagtcccataataattaatagttacgtaagaaacaaaccaa |
36935107 |
T |
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| Q |
302 |
taaataatctatacacttaaagatccaattcaaatccatcaaacccaaactcacactgtaaaaaatgaaatatactcagaaaagacaagtgcataccagt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36935108 |
taaataatctatacacttaaagatccaattcaaatccatcaaacccaaactcacactgtaaaaaatgaaatatactcagaaaagacaagtgcataccagt |
36935207 |
T |
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| Q |
402 |
gattattaggagacaaaaatgttgaagagactttctataactcctcccnnnnnnngagtgattattataaatgcaggtcacgct |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
36935208 |
gattattaggagacaaaaatgttgaagagactttctataactcctccctttttttgagtgattattataaaagcaggtcacgct |
36935291 |
T |
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