View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18397_high_2 (Length: 376)
Name: NF18397_high_2
Description: NF18397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18397_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 48594046 - 48593674
Alignment:
| Q |
1 |
ggaagatcaaatagcaaaactatgagaaaattaaaacaatcaccctgcattgcaggcgatatcctgttactgcttctctctacataatacaacatttcct |
100 |
Q |
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| T |
48594046 |
ggaagatcaaatagcaaaactatgagaaaattaaaacaattaccctgcattgcaggcgatatcctgttacagcttctctctacataatacaacatttcct |
48593947 |
T |
|
| Q |
101 |
acccttacctaattcctataactccttgccactatatattcaatatttagtcataaaattgtaggattagtttagttatctcaatatctaatatcacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48593946 |
acccttacctaattcctataactccttgccactatatattcaatatttagtcataaaattgtaggattagtttagttatctcaatatctagtatcacata |
48593847 |
T |
|
| Q |
201 |
atataactccgtacctccgttgacatttatagagacccttatacttgg------tattctttcaagaaagctataatttcttgttcttataccttgttat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48593846 |
atataactccgtacctccgttgacatttatagagacccttatacttggtttgcatattctttcaagaaacctataatttcttgttcttataccttgttat |
48593747 |
T |
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| Q |
295 |
tacattaataaagtaaggaatttccttatatttactgtttatgcctttagtttatcttgttttgttgatgatg |
367 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
48593746 |
tacattaataaagtaaggaatttccttatatttacggtttatgcctttagtttatcttgttttgtttatgatg |
48593674 |
T |
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