View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18397_low_5 (Length: 292)
Name: NF18397_low_5
Description: NF18397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18397_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 39054734 - 39054471
Alignment:
| Q |
13 |
tcatcagcaggtgtggccataaggttcctatgtttacatcatgtatattattaattaatagtctttttgagaagctaaagttacaacaaaaatatattga |
112 |
Q |
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| T |
39054734 |
tcatcagcaggtgtggccataaggttcctatgtttacatcatgtatattattaattaatagtctttctgagaagctaaagttacaacaaaaatatattga |
39054635 |
T |
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| Q |
113 |
taattttgtcccggtccagtcttttgacacaacaaaaagtcttactttgcttgaaattgaagactaaagttagtttatgaacaacactaacacatctggg |
212 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
39054634 |
taattttgtccccgtccagtcttttgatacaacaaaaagtcttcctttgcttgaaattgaaggctaaagttaatttatgaacaacactaacacatctggg |
39054535 |
T |
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| Q |
213 |
tatgtgagatgtcttttacataataaaccgtgaaggttttgcacaataccccaaaacagacact |
276 |
Q |
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| T |
39054534 |
tatgtgagatgtcttttacataataaaccgtgaaggttttgcacaataccccaaatcatacact |
39054471 |
T |
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