View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18398_high_1 (Length: 693)
Name: NF18398_high_1
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_1 |
 | |
|
| [»] scaffold0535 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 29109085 - 29109376
Alignment:
| Q |
1 |
aaaaagaaaaacaattaaaaactataggaaagaaagtcccagctgcacccatcttcaggggatacaagagaccatctagaggggaggcatggtaaaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29109085 |
aaaaagaaaaacaattaaaaactataggaaagaaagtcccagctgcacccatcttcaggggatacaagagaccatctagaggggaggcatggtaaaccat |
29109184 |
T |
|
| Q |
101 |
atcattatctgaggaggctccaagcttggccgaaaaattcgcacattgatttctctctttgagagtgtgacaaacaataatattagtttgttcaatctag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29109185 |
atcattatctgaggaggctccaagcttggccaaaaaattcgcacattgatttctctctttgagagtgtgacaaacaataatattagtttgttcaatctag |
29109284 |
T |
|
| Q |
201 |
tccttcacgtcttgaatcaaaacagcataaacatgaaatttgggagttgggtctttgacgaggttaatacaaagtaaagagtcagagtagca |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29109285 |
tccttcacgtcttgaatcaaaacagcataaacatgaaatttgggagttgggtctttgacgaggttaatacaaagtaaagagtcagagtagca |
29109376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 29075920 - 29076211
Alignment:
| Q |
1 |
aaaaagaaaaacaattaaaaactataggaaagaaagtcccagctgcacccatcttcaggggatacaagagaccatctagaggggaggcatggtaaaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29075920 |
aaaaagaaaaacaattaaaaactataggaaagaaagtcccagctgcacccatcttcaggggatacaagagaccatctagaggggaggcatggtaaaccat |
29076019 |
T |
|
| Q |
101 |
atcattatctgaggaggctccaagcttggccgaaaaattcgcacattgatttctctctttgagagtgtgacaaacaataatattagtttgttcaatctag |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29076020 |
atcattatcttaggaggctccaagcttggtcaaaaaattcgcacattgatttctctctctgagagtgtgacaaacaataatattagtttgttcagtctag |
29076119 |
T |
|
| Q |
201 |
tccttcacgtcttgaatcaaaacagcataaacatgaaatttgggagttgggtctttgacgaggttaatacaaagtaaagagtcagagtagca |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
29076120 |
tccttcacgtcttgaatcaaaacagcataaacataaaatttgggagttgggtctttgacgaggttaataaaaagtaaagagtcggagtagca |
29076211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 291 - 630
Target Start/End: Original strand, 29109626 - 29109958
Alignment:
| Q |
291 |
catacaagggacagagtatttgaaatgaatttgcaagctttgcataaatttatttatttatagaagcacgtttcaagaccttggaagggttatggaggaa |
390 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
29109626 |
catacaagggacag--tatttggaatgaatttgcaagctttgcataaatttatttatttatagaagcacgtttcaagaccttgtaaggtttatggaggaa |
29109723 |
T |
|
| Q |
391 |
ctggatgataaaatttgagttacactccttgggaatcaaaagtttagctatcaagtagtactttttataactaataaaattttgtgtgtattccattttt |
490 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
29109724 |
ctggatgataaaatttgagttacattccttgggaatcaaaagtttagctatcaagcagtactttttataactatcaaa---ttgtgtgtattccattttt |
29109820 |
T |
|
| Q |
491 |
ctcttgttcaaaattttgatcagtaattgcaatcactgatctcttatgctacatatggaatggagctatagagcaacccatgaaaattgattaagactct |
590 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29109821 |
cttttgttcaaaattttgattagtaattgcaatcactgatctcttatgctacatatggaatggagctatagagcaacccatgaaaattgattaaga--ct |
29109918 |
T |
|
| Q |
591 |
gccaaaatataatttgaacttgaaaaatattagtagtgat |
630 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29109919 |
gctaaaatataatttgaacttcaaaaatattagtagtgat |
29109958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 291 - 458
Target Start/End: Original strand, 29076459 - 29076624
Alignment:
| Q |
291 |
catacaagggacagagtatttgaaatgaatttgcaagctttgcataaatttatttatttatagaagcacgtttcaagaccttggaagggttatggaggaa |
390 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
29076459 |
catacaagggacag--tatttggaatgaatttgcaagctttgcataaatttatttatttatagaagcacgtttcaagaccttgtaaggtttatggaggaa |
29076556 |
T |
|
| Q |
391 |
ctggatgataaaatttgagttacactccttgggaatcaaaagtttagctatcaagtagtactttttat |
458 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29076557 |
ctggatgataaaatttgagttacattccttgggaatcaaaagtttagctatcaagcagtactttttat |
29076624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 504 - 630
Target Start/End: Original strand, 29076618 - 29076742
Alignment:
| Q |
504 |
ttttgatcagtaattgcaatcactgatctcttatgctacatatggaatggagctatagagcaacccatgaaaattgattaagactctgccaaaatataat |
603 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||| ||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
29076618 |
tttttatcagtaattgcaatcactgatcacttatgctacatttggaatgacgctataaagcatcccatgaaacttgattaaga--ctgctaaaatataat |
29076715 |
T |
|
| Q |
604 |
ttgaacttgaaaaatattagtagtgat |
630 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
29076716 |
ttgaacttcaaaaatattagtagtgat |
29076742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 636 - 676
Target Start/End: Original strand, 29110030 - 29110070
Alignment:
| Q |
636 |
atgctcaaatgacatcccaacaagactggaatcccaaaaga |
676 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
29110030 |
atgctcaaatgacatcccaacaagactggcaccccaaaaga |
29110070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 636 - 676
Target Start/End: Original strand, 29076814 - 29076854
Alignment:
| Q |
636 |
atgctcaaatgacatcccaacaagactggaatcccaaaaga |
676 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
29076814 |
atgctcaaatgacatcccaacaagaccggcaccccaaaaga |
29076854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 9e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 28 - 298
Target Start/End: Original strand, 45463209 - 45463479
Alignment:
| Q |
28 |
gaaagaaagtcccagctgcacccatcttcaggggatacaagagaccatctagaggggaggcatggtaaaccatatcattatctgaggaggctccaagctt |
127 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| | | |||| ||||||| ||||||||| ||||| ||||| ||||| |||||||||||||||||| || |
|
|
| T |
45463209 |
gaaagaaagttccagctgcagccatcttcagggaaaataagaaaccatctcgaggggaggtatggtgaaccaaatcatgatctgaggaggctccaaggtt |
45463308 |
T |
|
| Q |
128 |
ggccgaaaaattcgcacattgatttctctctttgagagtgtgacaaacaataatattagtttgttcaatctagtccttcacgtcttgaatcaaaacagca |
227 |
Q |
| |
|
|||| | |||| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| || |
|
|
| T |
45463309 |
ggccaagaaatctgcacattgatttttctctctgagagtgtgacaaacaataatattactttgttctatcaagtccttcacgtcttgaatcaaaacggcg |
45463408 |
T |
|
| Q |
228 |
taaacatgaaatttgggagttgggtctttgacgaggttaatacaaagtaaagagtcagagtagcatacaag |
298 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||||| |||||||||||| |||||||| || ||||| |
|
|
| T |
45463409 |
taaacatgaaacctaagagttgggtctttgaggaggttaacacaaagtaaagaatcagagtaacaaacaag |
45463479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 38323965 - 38323805
Alignment:
| Q |
25 |
taggaaagaaagtcccagctgcacccatcttcaggggatacaagagaccatctagaggggaggcatggtaaaccatatcattatctgaggaggctccaag |
124 |
Q |
| |
|
|||||||||||||| || ||||| | |||||||||||||| || | ||||||| ||||||||||||| ||||||| ||||| || ||||||||| ||||| |
|
|
| T |
38323965 |
taggaaagaaagtctcaactgcatcgatcttcaggggatataaaaaaccatctggaggggaggcatgataaaccaaatcatcatatgaggaggcaccaag |
38323866 |
T |
|
| Q |
125 |
cttggccgaaaaattcgcacattgatttctctctttgagagtgtgacaaacaataatatta |
185 |
Q |
| |
|
|||| || | |||| || ||||||||||| |||| ||| |||| ||||||||||||||||| |
|
|
| T |
38323865 |
cttgaccaagaaatccgtacattgatttccctctctgatagtgcgacaaacaataatatta |
38323805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 26 - 273
Target Start/End: Complemental strand, 46688842 - 46688595
Alignment:
| Q |
26 |
aggaaagaaagtcccagctgcacccatcttcaggggatacaagagaccatctagaggggaggcatggtaaaccatatcattatctgaggaggctccaagc |
125 |
Q |
| |
|
||||| |||||||||| ||||| |||||| |||| ||| |||||||||| | ||||| |||||||| ||||| ||||| || |||||||||||||| | |
|
|
| T |
46688842 |
aggaatgaaagtcccaactgcattcatctttagggaatataagagaccattcaaaggggtggcatggtgaaccaaatcatgatatgaggaggctccaaac |
46688743 |
T |
|
| Q |
126 |
ttggccgaaaaattcgcacattgatttctctctttgagagtgtgacaaacaataatattagtttgttcaatctagtccttcacgtcttgaatcaaaacag |
225 |
Q |
| |
|
||| || ||||||| | |||||||||| | |||||||||||||||||||| ||||| ||||||| ||| | | |||||||||||||| ||| || | |
|
|
| T |
46688742 |
ttgaccaaaaaatttgtgcattgatttcccatcctgagagtgtgacaaacaatagtattactttgttccatcaaatacttcacgtcttgaaccaacacgg |
46688643 |
T |
|
| Q |
226 |
cataaacatgaaatttgggagttgggtctttgacgaggttaatacaaa |
273 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |||||||| ||||| |
|
|
| T |
46688642 |
cataaacatgaaacctgggagttgggcctttgaggaggttaacacaaa |
46688595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 39665034 - 39664938
Alignment:
| Q |
142 |
cacattgatttctctctttgagagtgtgacaaacaataatattagtttgttcaatctagtccttcacgtcttgaatcaaaacagcataaacatgaaa |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||| |||| |||||| ||||||| ||||||||||| ||||| ||||||| ||||| |
|
|
| T |
39665034 |
cacattgatttctctctttgagagtgtgacaaaatataatgttactttgctcaatcaagtccttaacgtcttgaattaaaacgacataaacttgaaa |
39664938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 4403319 - 4403199
Alignment:
| Q |
117 |
gctccaagcttggccgaaaaattcgcacattgatttctctctttgagagtgtgacaaacaataatattagtttgttcaatctagtccttcacgtcttgaa |
216 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| | || | |||||||| ||||||| | |||| |||| |||||| | || ||||| ||||||| |
|
|
| T |
4403319 |
gctccaagcttggccatgaaatccgcacattgattaccttccctaagagtgtggtaaacaatgacattattttggtcaatcaaatctttcacatcttgaa |
4403220 |
T |
|
| Q |
217 |
tcaaaacagcataaacatgaa |
237 |
Q |
| |
|
||||||| ||||| ||||||| |
|
|
| T |
4403219 |
tcaaaaccgcatagacatgaa |
4403199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0535 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0535
Description:
Target: scaffold0535; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 9400 - 9298
Alignment:
| Q |
29 |
aaagaaagtcccagctgcacccatcttcaggggatacaagagaccatctagaggggaggcatggtaaaccatatcattatctgaggaggctccaagcttg |
128 |
Q |
| |
|
||||||||||||||| || ||||| | ||| | | ||||||| |||||||||| ||| |||||| | || |||| ||||||| ||||||||||||||| |
|
|
| T |
9400 |
aaagaaagtcccagcagcgtccatcctaaggaggttcaagagatcatctagaggaaaggaatggtagaacagatcagtatctgaagaggctccaagcttg |
9301 |
T |
|
| Q |
129 |
gcc |
131 |
Q |
| |
|
||| |
|
|
| T |
9300 |
gcc |
9298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 238
Target Start/End: Complemental strand, 39407759 - 39407594
Alignment:
| Q |
73 |
catctagaggggaggcatggtaaaccatatcattatctgaggaggctccaagcttggccgaaaaattcgcacattgatttctctctttgagagtgtgaca |
172 |
Q |
| |
|
||||| ||||||||| |||||| | || ||| |||| || ||||||||||||||||| |||| |||||||||||| | || || |||||||| | |
|
|
| T |
39407759 |
catctggaggggaggaatggtagaacaactcagtatccgaataggctccaagcttggccatgaaatccgcacattgattaccttccttaagagtgtggta |
39407660 |
T |
|
| Q |
173 |
aacaataatattagtttgttcaatctagtccttcacgtcttgaatcaaaacagcataaacatgaaa |
238 |
Q |
| |
|
|||||| | |||| |||| || ||| | || ||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
39407659 |
aacaatgacattattttgctccatcaaatctttcacatcttgaatcaaaatcgcatagacatgaaa |
39407594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 12734588 - 12734560
Alignment:
| Q |
210 |
tcttgaatcaaaacagcataaacatgaaa |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12734588 |
tcttgaatcaaaacagcataaacatgaaa |
12734560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 11106861 - 11106833
Alignment:
| Q |
210 |
tcttgaatcaaaacagcataaacatgaaa |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11106861 |
tcttgaatcaaaacagcataaacatgaaa |
11106833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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