View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_20 (Length: 390)
Name: NF18398_high_20
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 45147818 - 45147613
Alignment:
| Q |
1 |
aagggtgatcaatatcatttttctgttgtagtcaagcgagaaaatccaacatgagttttagaatgagaagtattgcctacctctttgttccaattggttt |
100 |
Q |
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| T |
45147818 |
aagggtgatcaata-catttttctgttgtagtcaagcgagaaaatccaacatgagtcttagaatgagaagtattgcctacctctttgttccaattggttt |
45147720 |
T |
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| Q |
101 |
tgtaaagtatccccgagagcagcaaggtctggaggagaattccacatatcatacctccccaaagtccctnnnnnnnttcagaatcattataaagagttgt |
200 |
Q |
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| T |
45147719 |
tgtaaagtatccccgagagcagcaaggtctggaggagaattccacatatcatacctccccaaagtccctaaaaaaattcagaatcattagaaagagttgt |
45147620 |
T |
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| Q |
201 |
tcgcttc |
207 |
Q |
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||||||| |
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| T |
45147619 |
tcgcttc |
45147613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 234 - 373
Target Start/End: Complemental strand, 45147586 - 45147447
Alignment:
| Q |
234 |
atcttctacctataaaacagtcaatgagtctttggatagaaatgtttatcaaaaagaggcattaaagcaggaaccattcatgacattaacatttttcact |
333 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45147586 |
atcttctacctataaaacggtcaatgagtctttggatagaaatgtttatcaaaaagaggcattaaagcaggaaccattcatgacattaacatttttcact |
45147487 |
T |
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| Q |
334 |
caacagcaaacaagtaaggacacatttactttctaacaac |
373 |
Q |
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| T |
45147486 |
caacagcaaacaagtaaggacacatttactttctaacaac |
45147447 |
T |
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