View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_22 (Length: 371)
Name: NF18398_high_22
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 28930655 - 28930998
Alignment:
| Q |
19 |
tttggtgaaaccaaaagtatataactctactatttatcaacactggtgatatattcaatagagatgatttcccttcatt-attatttactttcacatcag |
117 |
Q |
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| T |
28930655 |
tttggtgaaaccaaaagtatatacctctactatttatcaacactggtgatatattcaatagagatgatttcccttcatttattatttactttcacatcgg |
28930754 |
T |
|
| Q |
118 |
ggaaaaaagagccaagtgcatccctcaaaagtattgcctctctttcactctcacctgtcttccagaccttgtagtttaagggagaagatgtggcagattc |
217 |
Q |
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| T |
28930755 |
ggaaaaaagagctaagtgcatccctcaaaagtattgcctctctttcactctcacctgtcttccagaccttgtagtttaagggagaagatgtggcagattc |
28930854 |
T |
|
| Q |
218 |
gctccagcgtttgagtacagacattgaaaaaggcccttttgttccaccacctcgaatgcccgaacaatgccaaatggaaacatcagaactcaccactccc |
317 |
Q |
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| T |
28930855 |
gctccagcgtttgagtacagacattgaaaaaggcccttttgttccaccacctcgaatacccgaacaatgccaaatggaaacatcagaactcaccactccc |
28930954 |
T |
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| Q |
318 |
tttctttctgctgaagtgactttaatattaacatcctcttcatc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28930955 |
tttctttctgctgaagtgactttaatattaacatcctcttcatc |
28930998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 28897583 - 28897929
Alignment:
| Q |
20 |
ttggtgaaaccaaaagtatataactctactatttatcaacactggtgatat-attcaatagagatgatttcccttcattattatttactttcacatcagg |
118 |
Q |
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| T |
28897583 |
ttggtgaaaacaaaagtatataactatattaattatcaaaactggtgatgttattaaatagagatgatttcccttcattttgacttactttcacattagg |
28897682 |
T |
|
| Q |
119 |
gaaaaaagagcc-aagtgcatccctcaaaagtattgcctctctttcactctcacctgtcttccagaccttgtagtttaagggagaagatgtgg---caga |
214 |
Q |
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| T |
28897683 |
gaaaaaacagcttaagtgcatccctcagaagcattgcctctctttcactttcacctgtcttccagaccttgaagtctaagggagaaaatgtggaatccaa |
28897782 |
T |
|
| Q |
215 |
ttcgctccagcgtttgagtacagacattgaaaaaggcccttttgttccaccacctcgaatgcccgaacaatgccaaatggaaacatcagaactcaccact |
314 |
Q |
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| T |
28897783 |
ttcgctccactgtttgagtatagacattggaaaaggccctcttgttccactaccacaaatacccgaacagtgccaaataggaatatcaggactctccact |
28897882 |
T |
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| Q |
315 |
ccctttctttctgctgaagtgactttaatattaacatcctcttcatc |
361 |
Q |
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| T |
28897883 |
ccctttctttccgatgaagttattttaatattcacatcctcttcatc |
28897929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 30 - 333
Target Start/End: Original strand, 28887927 - 28888237
Alignment:
| Q |
30 |
caaaagtatataactctactatttatcaacactg--gtgatatattcaatagagatgatttcccttcattattatttactttcacatcaggga-aaaaag |
126 |
Q |
| |
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||||||||||||||||||||| ||||||||||| ||||| || ||||||||| |||||||||||||| | |||||||||| | | ||| |||||| |
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| T |
28887927 |
caaaagtatataactctactaactatcaacactgatgtgatgtactcaatagaggtgatttcccttcatattgatttactttccctttggggggaaaaag |
28888026 |
T |
|
| Q |
127 |
agcc-aagtgcatccctcaaaagtattgcctctctttcactctcacctgtcttccagaccttgtagtttaagggagaagatgtggcag---attcgctcc |
222 |
Q |
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|||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| | | |||||||||| |||||| | ||||||||| |
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| T |
28888027 |
agcccaagtgcatccctcagaagcattgcctctctttcactctcatctgtcttccagaccttgaaatctaagggagaaaatgtggaatccaattcgctcc |
28888126 |
T |
|
| Q |
223 |
agcgtttgagtacagacattgaaaaaggcccttttgttccaccacctcgaatgcccgaacaatgccaaatggaaacatcagaactcaccactccctttct |
322 |
Q |
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| T |
28888127 |
agtgtttgagtacagacattggaaaaggcccttttgtttcactaccacgaatacctgaacaataccaaatggaaatatcaggattctccactccctttct |
28888226 |
T |
|
| Q |
323 |
ttctgctgaag |
333 |
Q |
| |
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| T |
28888227 |
tgctgctgaag |
28888237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 28912086 - 28912434
Alignment:
| Q |
18 |
atttggtgaaaccaaaagtatataact--ctactatttatcaacactggtgatatattcaatagagatgatttcccttcattattatttactttcacatc |
115 |
Q |
| |
|
||||||||||| ||||| |||||| | ||||| ||||||||||||||||| |||| | ||||||||||||||||||||| | ||||||||| |||| |
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| T |
28912086 |
atttggtgaaaacaaaattatatatataactactgattatcaacactggtgatgtatt-agtagagatgatttcccttcattttgatttactttgacatt |
28912184 |
T |
|
| Q |
116 |
agggaaaaaagagcc-aagtgcatccctcaaaagtattgcctctctttcactctcacctgtcttccagaccttgtagtttaagggagaagatgtgg---c |
211 |
Q |
| |
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|||||||||||||| |||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||| ||| |||||||| | |||||| | |
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| T |
28912185 |
agggaaaaaagagcttaagtgcatccctcagaagcattgcctctctttcactctcgcccgtcttccagaccttgaagtctaagggagcatatgtggaatc |
28912284 |
T |
|
| Q |
212 |
agattcgctccagcgtttgagtacagacattgaaaaaggcccttttgttccaccacctcgaatgcccgaacaatgccaaatggaaacatcagaactcacc |
311 |
Q |
| |
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|||| |||||| |||||||||||| ||||| |||||||||| ||||||||| || |||| |||||||| | |||||| | || |||| |||| || |
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| T |
28912285 |
caattcactccagtgtttgagtacagtcattggaaaaggccctcttgttccacagccacgaacacccgaacagtaccaaataggaatatcaatactctcc |
28912384 |
T |
|
| Q |
312 |
actccctttctttctgctgaagtgactttaatattaacatcctcttcatc |
361 |
Q |
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||||||||||| | | ||||||||||||| |||| |||||||||||||| |
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| T |
28912385 |
gctccctttcttccagatgaagtgactttactattcacatcctcttcatc |
28912434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 106 - 361
Target Start/End: Original strand, 28921671 - 28921930
Alignment:
| Q |
106 |
ctttcacatcagggaaaaaagagcc-aagtgcatccctcaaaagtattgcctctctttcactctcacctgtcttccagaccttgtagtttaagggagaag |
204 |
Q |
| |
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|||| |||||| |||||||||||| |||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||| | |
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| T |
28921671 |
ctttgacatcaaggaaaaaagagcttaagtgcatcccttagaagcattgcctctctttcactctcacccgtcttccagaccttgaagtctaagggagcat |
28921770 |
T |
|
| Q |
205 |
atgtgg---cagattcgctccagcgtttgagtacagacattgaaaaaggcccttttgttccaccacctcgaatgcccgaacaatgccaaatggaaacatc |
301 |
Q |
| |
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|||||| | |||| |||||| |||||||||||| ||||| |||||||||| ||||||||| || |||| |||||||| | |||||| | || ||| |
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| T |
28921771 |
atgtggaatccaattcactccagtgtttgagtacagtcattggaaaaggccctcttgttccacagccacgaacacccgaacagtaccaaataggaatatc |
28921870 |
T |
|
| Q |
302 |
agaactcaccactccctttctttctgctgaagtgactttaatattaacatcctcttcatc |
361 |
Q |
| |
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| |||| |||||||||||||| | | |||||| |||| |||| | |||||||||||||| |
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|
| T |
28921871 |
aatactctccactccctttcttccagatgaagttacttcaatactcacatcctcttcatc |
28921930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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