View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18398_high_26 (Length: 345)

Name: NF18398_high_26
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18398_high_26
NF18398_high_26
[»] chr8 (2 HSPs)
chr8 (1-332)||(1669674-1670007)
chr8 (1-149)||(1665124-1665271)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-332)||(7565-7895)
[»] chr2 (1 HSPs)
chr2 (1-330)||(5997310-5997617)


Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 1669674 - 1670007
Alignment:
Q  1 ttttcaatgcaggaacttgtgttttaaacaaacac--gatgaggtttcagggtgttaaaaacttgagttttgtcacttttgaattttgatacaagaacaa 98  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1669674 ttttcaatgcaggaacttgtgttttaaacaaacacaggatgaggtttcagggtgttaaaaacttgagttttgtcacttttgaattttgatacaagaacaa 1669773  T
Q  99 cattaaactatccatttccacgggtaccattgtataaaaactagaattttgtagtgttttgagtcttcgaagattctgatttgaatttgcattctatttc 198  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1669774 cattaaactatccatttccaagagtaccattgtataaaaactagaattttgtagtgttttgagtcttcgaagattctgatttgaatttgcattctatttc 1669873  T
Q  199 ttttttatatcatagcatgtttctctgcatcatccatccagaccattttggctccacaaatttaaaataaatttcacaaatatcatatgcaaagtgaaaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1669874 ttttttatatcatagcatgtttctctgcatcatccatccagaccattttggctccacaaatttaaaataaatttcacaaatatcatatgcaaagtgaaaa 1669973  T
Q  299 cttgaaatcaaacagtaaggtctagaagacactg 332  Q
    ||||||||||||||||||||||||||||||||||    
T  1669974 cttgaaatcaaacagtaaggtctagaagacactg 1670007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1665124 - 1665271
Alignment:
Q  1 ttttcaatgcaggaacttgtgttttaaacaaacac--gatgaggtttcagggtgttaaaaacttgagttttgtcacttttgaattttgatacaagaacaa 98  Q
    ||||||| |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   ||    
T  1665124 ttttcaaggcaggagcttatgtttcaaacaaacacaagatgaggtttcagggtgttaaaaacttgagttttgtcacttttgaatttggatacaag---aa 1665220  T
Q  99 cattaaactatccatttccacgggtaccattgtataaaaactagaattttg 149  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  1665221 cattaaactatccatttccacgggaaccattgcataacaactagaattttg 1665271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 7565 - 7895
Alignment:
Q  1 ttttcaatgcaggaacttgtgttttaaacaaacac--gatgaggtttcagggtgttaaaaacttgagttttgtcacttttgaattttgatacaagaacaa 98  Q
    ||||||| |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  7565 ttttcaaggcaggagcttatgtttcaaacaaacacaagatgaggtttcagggtgttaaaaacttgagttttgtcacttttgaatttggatacaagaaca- 7663  T
Q  99 cattaaactatccatttccacgggtaccattgtataaaaactagaattttgtagtgttttgagtcttcgaagattctgatttgaatttgcattctatttc 198  Q
      |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  7664 --ttaaactatccatttccacgggaaccattgcataacaactagaattttgtagtgttttgagtcttcaaagattctgatttgaatgtgcattctgtttc 7761  T
Q  199 ttttttatatcatagcatgtttctctgcatcatccatccagaccattttggctccacaaatttaaaataaatttcacaaatatcatatgcaaagtgaaaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7762 ttttttatatcatagcatgtttctctgcatcatccatccagaccattttggctacacaaatttaaaataaatttcacaaatatcatatgcaaagtgaaaa 7861  T
Q  299 cttgaaatcaaacagtaaggtctagaagacactg 332  Q
    ||||||||||||||||||||||||||||||||||    
T  7862 cttgaaatcaaacagtaaggtctagaagacactg 7895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 5997617 - 5997310
Alignment:
Q  1 ttttcaatgcaggaacttgtgttttaaacaaacac--gatgaggtttcagggtgttaaaaacttgagttttgtcacttttgaattttgatacaagaacaa 98  Q
    ||||||| |||||||||| ||| ||||||||||||  |||||||||||||||| | |||| |||||||||||||||||||||       |||||||||||    
T  5997617 ttttcaaggcaggaacttatgtgttaaacaaacacaagatgaggtttcagggtatcaaaagcttgagttttgtcacttttga-------tacaagaacaa 5997525  T
Q  99 cattaaactatccatttccacgggtaccattgtataaaaactagaattttgtagtgttttgagtcttcgaagattctgatttgaatttgcattctatttc 198  Q
    ||||||| |||||||           |||      || ||  ||||||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||    
T  5997524 cattaaattatccat-----------ccag-----aacaatcagaattttgtagtgttttgagtcttagaagattcttatttgaatgtgcattctgtttc 5997441  T
Q  199 ttttttatatcatagcatgtttctctgcatcatccatccagaccattttggctccacaaatttaaaataaatttcacaaatatcatatgcaaagtgaaaa 298  Q
    ||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  5997440 ttttttatatcctagcacgtttctctgcataatccatccagaacattttggctccacaaa-ttaaaataaatttcacaaaaatcatacgcaaagtgaaaa 5997342  T
Q  299 cttgaaatcaaacagtaaggtctagaagacac 330  Q
    || ||| ||||| |||||||||||||||||||    
T  5997341 ctggaattcaaagagtaaggtctagaagacac 5997310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University