View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_3 (Length: 571)
Name: NF18398_high_3
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 11 - 555
Target Start/End: Original strand, 40733955 - 40734499
Alignment:
| Q |
11 |
aagaatactagcataaaattagtgaagttgttaaagacagacttggaagctcccacggattgtacttgtaaagatttatttctgctatgaatgaagcagg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40733955 |
aagaatactagcataaaattagtgaagttgttaaagacagacttggaagctcccacggattgtacttgtaaagatttatttctgctatgaatgaagcagg |
40734054 |
T |
|
| Q |
111 |
aagaggagatgaagtcactttgtttcttagatagtgaacaatgagttcttcatcagaagggtggaatctaaatccaggagggagttgaatttctgaatga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40734055 |
aagaggagatgaagtcactttgtttcttagatagtgaacaatgagttcttcatcagaagggtggaatctaaatccaggagggagttgaatttctgaatga |
40734154 |
T |
|
| Q |
211 |
ggatttttgtccatgaagatgaaggtagaatgtcgacgtaggaaactaggaaattaattgttcagttgccgatattatcgaccaaaatggttgtaagctt |
310 |
Q |
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| T |
40734155 |
ggatttttgtccatgaagatgaaggtagaatgtcgacgtaggaaactaggaaatttattgttcagttgccgatattatcgaccaaaatggttgtaagctt |
40734254 |
T |
|
| Q |
311 |
gaaatcactgtgcataggttatatatatatgagtgtgctgtttgatcatgcagataaggacaattatcttctaatataatactaggttggtggtaggtgc |
410 |
Q |
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| T |
40734255 |
gaaatcactgtgcataggttatatatatatgagtgtgctgtttgatcatgcagataaggacaattatcttctaatataatactaggttggtggtaggtgc |
40734354 |
T |
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| Q |
411 |
atcagtgtgaaaacagatgaggaaaacaacctttttgtcccatgttatatgacaacattcttcaaaggatatttttaatcagcatgattactttgaaatt |
510 |
Q |
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| T |
40734355 |
atcagtgtgaaaacagatgaggaaaacaacctttttgtcccatgttatatgacaacattcttcaaaggatatttttaatcagcatgattactttgaaatt |
40734454 |
T |
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| Q |
511 |
taggcaaaagattgagtcttgtggtgaccaaaatcaggttatatt |
555 |
Q |
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| T |
40734455 |
taggcaaaagattgagtcttgtggtgaccaaaatcaggttatatt |
40734499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 443 - 555
Target Start/End: Complemental strand, 37126429 - 37126317
Alignment:
| Q |
443 |
ttttgtcccatgttatatgacaacattcttcaaaggatatttttaatcagcatgattactttgaaatttaggcaaaagattgagtcttgtggtgaccaaa |
542 |
Q |
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| T |
37126429 |
ttttgtcccatgttatatgacaacattcttcaaaggatatttttaatcagcatgattactttgaaatttaggcaaaagattgagtcttatggtgaccaaa |
37126330 |
T |
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| Q |
543 |
atcaggttatatt |
555 |
Q |
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| T |
37126329 |
atcaggttatatt |
37126317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 294 - 476
Target Start/End: Complemental strand, 95603 - 95421
Alignment:
| Q |
294 |
aaaatggttgtaagcttgaaatcactgtgcataggttatatatatatgagtgtgctgtttgatcatgcagataaggacaattatcttctaatataatact |
393 |
Q |
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|||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
95603 |
aaaatgattgtaagcgtgaaatcactatgcataggttatatatatatgagtgtgttgtttgatcatgcaaataaggacaattatcttctaatataatact |
95504 |
T |
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| Q |
394 |
aggttggtggtaggtgcatcagtgtgaaaacagatgaggaaaacaacctttttgtcccatgttatatgacaacattcttcaaa |
476 |
Q |
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| T |
95503 |
cggttggtggtaggtgcatcagtgtgaaaacagatgaggaaaacaacctttttgtcccatgttatatgacaacattcttcaaa |
95421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 43327120 - 43326992
Alignment:
| Q |
11 |
aagaatactagcataaaattagtgaagttgttaaagacagacttggaagctcccacggattgtacttgtaaagatttatttctgctatgaatgaagcagg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43327120 |
aagaatactagcataaaattagtgaagttgttaaagacagacttggaagctcccacagattgtacttgtaaagatttatttctgctatgaatgaagcagg |
43327021 |
T |
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| Q |
111 |
aagaggagatgaagtcactttgtttctta |
139 |
Q |
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| T |
43327020 |
aagaggagatgaagtcactttgtttctta |
43326992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 465 - 555
Target Start/End: Complemental strand, 43326992 - 43326902
Alignment:
| Q |
465 |
acattcttcaaaggatatttttaatcagcatgattactttgaaatttaggcaaaagattgagtcttgtggtgaccaaaatcaggttatatt |
555 |
Q |
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| T |
43326992 |
acattcttcaaaggatatttttaatcagcataattactttgaaatttaggcaaaagattgagtcttgtggtgaccaaagtcaggttatatt |
43326902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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