View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18398_high_34 (Length: 310)
Name: NF18398_high_34
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 3367925 - 3367649
Alignment:
| Q |
1 |
tggttaagaaatttacttttcttggttaagttgattccgatttgatgcagttgacattttctaagttaagttgattttgatttgatgtaattgacatttt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3367925 |
tggttaagaaatttacttttctaggttaagttgattctgatttgatgcagttgacattttctaagttaagttgattctgatttgatgtaattgacatttt |
3367826 |
T |
|
| Q |
101 |
ctaggttaagttgattatgattatatttttgatgtaattgagattttatcgaattccgtaaccaccgccatcagagcgtcaagaatgcagcggcattgaa |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3367825 |
ctaggttaagttgattctg-----atttttgatgtaattgagattttatcgaattcggtaaccaccgccatcagagcatcaagaatgcagcggcattgaa |
3367731 |
T |
|
| Q |
201 |
cttacgattgcagttgaagcttgttcattattctttagcaaggtattattgtgctgcctatcaggtgtttgataatttgact |
282 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3367730 |
cttccaattgcagttgaagcttgttcattattctttagcaaggtattattgtgctgcctatcaggtgtttgataatttgact |
3367649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 11496360 - 11496296
Alignment:
| Q |
58 |
tttctaagttaagttgattttgatttgatgtaattgacattttctaggttaagttgattatgatt |
122 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||||||||| ||||||||| ||||| ||||| |
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|
| T |
11496360 |
tttctaggttaagttgatactgatttgatgcaattgacattttttaggttaagatgattctgatt |
11496296 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 11496360 - 11496293
Alignment:
| Q |
18 |
tttcttggttaagttgattccgatttgatgcagttgacattttctaagttaagttgattttgatttga |
85 |
Q |
| |
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||||| |||||||||||| | ||||||||||| |||||||||| || |||||| ||||| |||||||| |
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|
| T |
11496360 |
tttctaggttaagttgatactgatttgatgcaattgacattttttaggttaagatgattctgatttga |
11496293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 7710916 - 7710960
Alignment:
| Q |
238 |
gcaaggtattattgtgctgcctatcaggtgtttgataatttgact |
282 |
Q |
| |
|
||||||||| |||||| ||| ||| |||||||||||||||||||| |
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|
| T |
7710916 |
gcaaggtatgattgtgttgcatatgaggtgtttgataatttgact |
7710960 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 54188837 - 54188561
Alignment:
| Q |
1 |
tggttaagaaatttacttttcttggttaagttgattccgatttgatgcagttgacattttctaagttaagttgattttgatttgatgtaattgacatttt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
54188837 |
tggttaagaaatttacttttctaggttaagttgattctgatttgatgcagttgacattttctaagttaatttgattctgatttgatgtaattgacatttt |
54188738 |
T |
|
| Q |
101 |
ctaggttaagttgattatgattatatttttgatgtaattgagattttatcgaattccgtaaccaccgccatcagagcgtcaagaatgcagcggcattgaa |
200 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||||||||| |
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|
| T |
54188737 |
ctaggttaagttgattct-----tatttttgatgtaattgagattttatcgaattcggtaaccaccgccatcagagcataaaaaatgcagcggcattgaa |
54188643 |
T |
|
| Q |
201 |
cttacgattgcagttgaagcttgttcattattctttagcaaggtattattgtgctgcctatcaggtgtttgataatttgact |
282 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
54188642 |
cttccaattgcagttgaagcttgttcattattctttagcaaggtattattgtgctgcctatcaggtgttcgataatttgact |
54188561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 57 - 281
Target Start/End: Original strand, 8570397 - 8570616
Alignment:
| Q |
57 |
ttttctaagttaagttgattttgatttgatgtaattgacattttctaggttaagttgattatgattatatttttgatgtaattgagattttatcgaattc |
156 |
Q |
| |
|
||||||| |||||||||||| |||||||||| | ||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
8570397 |
ttttctaggttaagttgattctgatttgatgcagttgacattttctaagttaagttgattctg-----atttttgatgtaattgagattttatcgaattc |
8570491 |
T |
|
| Q |
157 |
cgtaaccaccgccatcagagcgtcaagaatgcagcggcattgaacttacgattgcagttgaagcttgttcattattctttagcaaggtattattgtgctg |
256 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8570492 |
ggtaaccaccgccatcagagcatcaagaatgcagcgacattgaacttccaattgcagttgaagcttgttcattattctttagcaaggtattattgtgctg |
8570591 |
T |
|
| Q |
257 |
cctatcaggtgtttgataatttgac |
281 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
8570592 |
cctatcaggtgttcgataatttgac |
8570616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 8570381 - 8570482
Alignment:
| Q |
1 |
tggttaagaaatttacttttcttggttaagttgattccgatttgatgcagttgacattttctaagttaagttgattttga--tttgatgtaattgacatt |
98 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |
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|
| T |
8570381 |
tggttaagaaatttacttttctaggttaagttgattctgatttgatgcagttgacattttctaagttaagttgattctgatttttgatgtaattgagatt |
8570480 |
T |
|
| Q |
99 |
tt |
100 |
Q |
| |
|
|| |
|
|
| T |
8570481 |
tt |
8570482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 57 - 281
Target Start/End: Original strand, 28696357 - 28696576
Alignment:
| Q |
57 |
ttttctaagttaagttgattttgatttgatgtaattgacattttctaggttaagttgattatgattatatttttgatgtaattgagattttatcgaattc |
156 |
Q |
| |
|
||||||| |||||||||||| |||||||||| | ||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
28696357 |
ttttctaggttaagttgattctgatttgatgcagttgacattttctaagttaagttgattctg-----atttttgatgtaattgagattttatcgaattc |
28696451 |
T |
|
| Q |
157 |
cgtaaccaccgccatcagagcgtcaagaatgcagcggcattgaacttacgattgcagttgaagcttgttcattattctttagcaaggtattattgtgctg |
256 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28696452 |
ggtaaccaccgccatcagagcatcaagaatgcagcgacattgaacttccaattgcagttgaagcttgttcattattctttagcaaggtattattgtgctg |
28696551 |
T |
|
| Q |
257 |
cctatcaggtgtttgataatttgac |
281 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
28696552 |
cctatcaggtgttcgataatttgac |
28696576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 28696341 - 28696442
Alignment:
| Q |
1 |
tggttaagaaatttacttttcttggttaagttgattccgatttgatgcagttgacattttctaagttaagttgattttga--tttgatgtaattgacatt |
98 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
28696341 |
tggttaagaaatttacttttctaggttaagttgattctgatttgatgcagttgacattttctaagttaagttgattctgatttttgatgtaattgagatt |
28696440 |
T |
|
| Q |
99 |
tt |
100 |
Q |
| |
|
|| |
|
|
| T |
28696441 |
tt |
28696442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 24229339 - 24229407
Alignment:
| Q |
18 |
tttcttggttaagttgattccgatttgatgcagttgacattttctaagttaagttgattttgatttgat |
86 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| |||||||||| || |||||| ||||| ||||||||| |
|
|
| T |
24229339 |
tttctaggttaagttgatactgatttgatgcaattgacattttttaggttaagatgattctgatttgat |
24229407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 24229339 - 24229403
Alignment:
| Q |
58 |
tttctaagttaagttgattttgatttgatgtaattgacattttctaggttaagttgattatgatt |
122 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
24229339 |
tttctaggttaagttgatactgatttgatgcaattgacattttttaggttaagatgattctgatt |
24229403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 29491147 - 29491094
Alignment:
| Q |
69 |
agttgattttgatttgatgtaattgacattttctaggttaagttgattatgatt |
122 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||||||||||||| ||||| |
|
|
| T |
29491147 |
agttgattttgatttgatgcaattgaagttttttaggttaagttgattctgatt |
29491094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 19884790 - 19884858
Alignment:
| Q |
18 |
tttcttggttaagttgattccgatttgatgcagttgacattttctaagttaagttgattttgatttgat |
86 |
Q |
| |
|
||||| |||||||||||| | ||||| ||||| |||||||||| || |||||| ||||| ||||||||| |
|
|
| T |
19884790 |
tttctaggttaagttgatactgatttaatgcaattgacattttttaggttaagatgattctgatttgat |
19884858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 19884790 - 19884854
Alignment:
| Q |
58 |
tttctaagttaagttgattttgatttgatgtaattgacattttctaggttaagttgattatgatt |
122 |
Q |
| |
|
|||||| ||||||||||| |||||| ||| |||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
19884790 |
tttctaggttaagttgatactgatttaatgcaattgacattttttaggttaagatgattctgatt |
19884854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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