View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_38 (Length: 291)
Name: NF18398_high_38
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_38 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 213 - 291
Target Start/End: Complemental strand, 5433874 - 5433796
Alignment:
| Q |
213 |
ccacttgcaaaccaggagtatggaaatggaaacgaaataagcaaaataaggtttcacactgaacgaaataggagcttga |
291 |
Q |
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| T |
5433874 |
ccacttgcaaaccaggagtatggaaatggaaacgaaataagcaaaataaggtttcacactgaacgaaataggagcttga |
5433796 |
T |
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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 5433975 - 5433938
Alignment:
| Q |
113 |
acttagaaatcataagtacattaaactgaattaataag |
150 |
Q |
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| T |
5433975 |
acttagaaatcataagtacattaaactgaattaataag |
5433938 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 37066147 - 37066179
Alignment:
| Q |
116 |
tagaaatcataagtacattaaactgaattaata |
148 |
Q |
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| T |
37066147 |
tagaaatcataagtacattaaacttaattaata |
37066179 |
T |
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