View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_47 (Length: 255)
Name: NF18398_high_47
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 33080831 - 33080589
Alignment:
| Q |
1 |
ttaattaacggaaatatatactgtacagtagctcttttctatttttgttgtttttctctcttctgaaaccatttatagtttatactttgaatcttgcttc |
100 |
Q |
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| T |
33080831 |
ttaattaacggaaatatatactgtacagtagctcttttctatttttgttgtttttctcttttctgaaaccatttatagtttatactttgaatcttgcttc |
33080732 |
T |
|
| Q |
101 |
ttacctagaatactattattattttacactccatgtttcctaaaatgattttcaaccaagatgctctcacttggtgaagtagcaaaaccagcaagggcat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33080731 |
ttacctagaatattattattattttacactccatgtttcctaaaatgattttcaaccaagatgctctcacttggtgaagtagcaaaaccagcaagggcat |
33080632 |
T |
|
| Q |
201 |
tagcgaaaaggggacctaattgttgtagctctgatgtgaaaat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33080631 |
tagcgaaaaggggacctaattgttgtagctctgatgtgaaaat |
33080589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 41514015 - 41513871
Alignment:
| Q |
83 |
tactttgaatcttgcttcttacctagaat---actattattattttacactccatgtttcctaaaatgattttcaaccaagatgctctcacttggtgaag |
179 |
Q |
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|||||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41514015 |
tactttgagtcttgcttcttacctagaatgttattattattattttacactccacgtttcctaaaacgattttcaaccaagatgctctcacttggtgaag |
41513916 |
T |
|
| Q |
180 |
tagcaaaaccagcaagggcattagcgaaaaggggacctaattgtt |
224 |
Q |
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| T |
41513915 |
tagcaaaaccagcaagggcattagcgaaaaggggacttaattgtt |
41513871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 243
Target Start/End: Complemental strand, 41523044 - 41522816
Alignment:
| Q |
31 |
gctcttttctatttttgttgtttttctctc-ttctgaaaccatttatagtttatactttgaa------------tcttgcttcttacctagaa---tact |
114 |
Q |
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|||||||||||||| |||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||| || | |
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| T |
41523044 |
gctcttttctatttatgttgttttttcatccttctgaaaccatttattgtttatactttgaagcttactttgagtcttgcttcttacctagaatgttatt |
41522945 |
T |
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| Q |
115 |
attattattttacactccatgtttcctaaaatgattttcaaccaagatgctctcacttggtgaagtagcaaaaccagcaagggcattagcgaaaagggga |
214 |
Q |
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||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41522944 |
attattattttacactccacgtttcctaatacgattttcaaccaagatgctctcacttggtgaagtagcaaaaccagcaagggcattagcgaaaagggga |
41522845 |
T |
|
| Q |
215 |
cctaattgttgtagctctgatgtgaaaat |
243 |
Q |
| |
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| T |
41522844 |
cttaattgtttaagctctaatctgaaaat |
41522816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 41508450 - 41508370
Alignment:
| Q |
160 |
gatgctctcacttggtgaagtagcaaaaccagcaagggcattagcgaaaaggggacctaattgttgtagctctgatgtgaaaat |
243 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||| |||||| ||| |||||| || ||||||||||| |||| ||||| |
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|
| T |
41508450 |
gatgctctcacttggtgaagaagcaaaaccaacaaggctattagcaaaatggggactta---gttgtagctctaatgttaaaat |
41508370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 41518594 - 41518490
Alignment:
| Q |
136 |
tttcctaaaatgattttcaaccaagatgctctcacttggtgaagtagcaaaaccagcaagggcattagcgaaaaggggacctaattgttgtagctctgat |
235 |
Q |
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|||||| |||||||||||| | ||| |||||||||||||||| |||||||||| ||||| |||| | ||||||| || || ||||||||||| || |
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| T |
41518594 |
tttccttaaatgattttcatcgtggattctctcacttggtgaagaagcaaaaccaacaaggccatttgtaaaaagggaactta---gttgtagctctaat |
41518498 |
T |
|
| Q |
236 |
gtgaaaat |
243 |
Q |
| |
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|||||||| |
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| T |
41518497 |
gtgaaaat |
41518490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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