View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_5 (Length: 499)
Name: NF18398_high_5
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 4 - 485
Target Start/End: Complemental strand, 21378430 - 21377954
Alignment:
| Q |
4 |
gggaaaattacttttcaaaaggatagataaagaattagcttggattgacttaactacacatatgattgaagattttggtgctaaagaaggggactatagt |
103 |
Q |
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| T |
21378430 |
gggaaaattatttttcaaaaggatagataaagaattagcttggattgacttaactacacatatgattgaagattttggtgctaaagaaggggactgtagt |
21378331 |
T |
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| Q |
104 |
tttaatatgctagtttgcaaggaaaattttcttccaatcgatcggtgtaataaataaaaataattgcttttcttgttttcactttaagcttattgagatg |
203 |
Q |
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| T |
21378330 |
tttaatatgctagtttgcaaggaaaattttcttccaatcgatcggtgtaataaataaaaataattgcttttcttgttttcactttaagcttattgagatg |
21378231 |
T |
|
| Q |
204 |
ttgattttgtgctttaatgnnnnnnnnnngtatttcaaatcaaaatcaataaattgtataaaaaagaatgagcaatgtataatctctaatcatcagtgta |
303 |
Q |
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| T |
21378230 |
ttgattttgtgctttaatg-tttttttttgtatttcaaatcaaaatcaataaattgaatgaaaaagaatgagcaatgtataatctcta---atcagtgta |
21378135 |
T |
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| Q |
304 |
gttgttacattaaagtatagtcaattttctctagaggaacttgtagaaccagggttcaatagggatcaatcaatcctttatccctagaaaattctcacat |
403 |
Q |
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| T |
21378134 |
g-tacaacattaaagtatagtcaattttctctagaggaacttgtagaaccagggttcaatagggatcaatcaatcctttatctctagaaaattctcacat |
21378036 |
T |
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| Q |
404 |
tatgaaacaaactattggccaatcgagggttttctgaagtagtaatagttagatttcccagtttaacaaacgtgtgctttat |
485 |
Q |
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| T |
21378035 |
tatgaaacaaactattggccaatcgagggttttctgaagtagtaatagttagatttcccagtttaacaaacgtgtgctttat |
21377954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 21374339 - 21374151
Alignment:
| Q |
4 |
gggaaaattacttttcaaaaggatagataaa-gaattagcttggattgacttaactacacatatgattgaagattttggtgctaaagaaggggactatag |
102 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |
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| T |
21374339 |
gggaaaattatttttcaaaaggatagataaatgaattagcttggattgacttaactacacatataattgaagattttggtgctgaagaaggggactgtag |
21374240 |
T |
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| Q |
103 |
ttttaatatgctagtttgcaaggaaaattttcttccaatcgatcggtgtaataaataaaaataattgcttttcttgttttcactttaagctt |
194 |
Q |
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|| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
21374239 |
ttataatatgctagtttacaaggaaaattttcatccaatcgatcggtgtaacaaataaa---atttgcttttcttgttttcactttaagctt |
21374151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 21370947 - 21370914
Alignment:
| Q |
315 |
aaagtatagtcaattttctctagaggaacttgta |
348 |
Q |
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| T |
21370947 |
aaagtatagtcaattttctctagaggaacttgta |
21370914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 21371058 - 21371020
Alignment:
| Q |
257 |
ttgtataaaaaagaatgagcaatgtataatctctaatca |
295 |
Q |
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| T |
21371058 |
ttgtataaaaaagaatgagaaatgtataatcactaatca |
21371020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 23686021 - 23685993
Alignment:
| Q |
433 |
ttttctgaagtagtaatagttagatttcc |
461 |
Q |
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| T |
23686021 |
ttttctgaagtagtaatagttagatttcc |
23685993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 24058258 - 24058230
Alignment:
| Q |
433 |
ttttctgaagtagtaatagttagatttcc |
461 |
Q |
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| T |
24058258 |
ttttctgaagtagtaatagttagatttcc |
24058230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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