View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_55 (Length: 239)
Name: NF18398_high_55
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5914486 - 5914712
Alignment:
| Q |
1 |
catcgtccttaagcaaataaacaaatnnnnnnntcactaaatatatttaatttttgaccataagcaattatttaatataaagtgaatattagtgatgcat |
100 |
Q |
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| T |
5914486 |
catcgtccttaagcaaataaacaaataaaaaaatcactaaatatatttaatttttgaccataagcaattatttaatataaagtgaatattagtgatgcat |
5914585 |
T |
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| Q |
101 |
at----atatatgagtgtatgtgtgcgtttctaattactcatttttcacattgtcccaacatctttagggtttcattttagaatatcatcatgatgaagc |
196 |
Q |
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| T |
5914586 |
atatatatatatgagtgtatgtgtgcgtttctaattactcatttttcacattgtcccaacatctttagggtttcattttagaatatcatcatgatgaagc |
5914685 |
T |
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| Q |
197 |
taggaggaagcattttcctaacctttg |
223 |
Q |
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| T |
5914686 |
taggaggaagcattttcctaacctttg |
5914712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 5923392 - 5923565
Alignment:
| Q |
38 |
taaatatatttaatttttgaccataagcaattatttaatataaagtgaatattagtgatgcatatatatatgagtgtatgtgtgcgtttctaattactca |
137 |
Q |
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||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||| |||||||| ||||||| | ||||||||||||||| |
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| T |
5923392 |
taaatatatttaaattttgaccttaagcaattaattaatatagagtgaatattagtgatg------tatatgagggtatgtgagtgtttctaattactca |
5923485 |
T |
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| Q |
138 |
tttttcacattgtcccaacatctttagggtttcattttagaatatcatcatgatgaagctaggaggaagcattttcctaa |
217 |
Q |
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| T |
5923486 |
tttttcacattgtcccaacatctttagggtttcattttagaatatcatcatgatgaagcttggaggaagaattttcctaa |
5923565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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