View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_59 (Length: 232)
Name: NF18398_high_59
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_59 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 17466136 - 17466327
Alignment:
| Q |
15 |
caaaggttagtccttatttgggaatttgttgtcctaaattgttggtaaaaaacactttaattttatatatatannnnnnnggtgttgttatgtgtggttt |
114 |
Q |
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| T |
17466136 |
caaaggttagtccttatttgggaatttgttgtcctaaattgttggtaaaaaacactttaattttatattttttttt-----gtgttgttatgtgtggttt |
17466230 |
T |
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| Q |
115 |
gcgtgcttagcccggtatttccgcaagaatcggactgatgtcgtcaaccatgcaacataacactaaaactttgatcatgatgtaaattttatgatta |
211 |
Q |
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| T |
17466231 |
gcgtgcttagcccggtatttccgcaagaatcggactgatgtcgtcaaccatgcaacataacactaaaactttgatcatgatgtaaattttatgatta |
17466327 |
T |
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Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 43116159 - 43116355
Alignment:
| Q |
15 |
caaaggttagtccttatttgggaatttgttgtcctaaattgttggtaaaaaacactttaattttatatatatannnnnnnggtgttgttatgtgtggttt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |
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| T |
43116159 |
caaaggttagtccttatttgggaatttgttgtcctaaattgttggtaaaaaacactttaattttataatttttttttttttgtgttgttatgtgtggttt |
43116258 |
T |
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| Q |
115 |
gcgtgcttagcccggtatttccgcaagaatcggactgatgtcgtcaaccatgcaacataacactaaaactttgatcatgatgtaaattttatgatta |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43116259 |
gcgtgcttagcccggtatttccgcaagaatcagactgatgtcgtcaaccatgcaacataacactaaaactttgatcatgatgtaaattttatgatta |
43116355 |
T |
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