View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18398_high_6 (Length: 489)
Name: NF18398_high_6
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 36 - 481
Target Start/End: Complemental strand, 32011687 - 32011241
Alignment:
| Q |
36 |
tgaaggtttaaattaacaagtgtgcatttggacacaaatatccacctaatactataataaggtatgtcaaaatatatatgagaatatacgttacctatgg |
135 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| |||||| |
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|
| T |
32011687 |
tgaaagttcaaattaacaagtgtgcatttggacacaaatatccacctaatactataatcgtgtatgtcaaaatatatatgagaatagacattatctatgg |
32011588 |
T |
|
| Q |
136 |
ccgtcttgggaagattatgaacaaccatattattctttctcatagaaaactcgacataagagttgttaaaa-tatcaggtaaagtaactccacacctaac |
234 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32011587 |
ccgtctttggaagattatgaacaaccatattattctctctcatagaaaactcgacataagagttgttaaaaatatcaggtaaagtaactccacacctaac |
32011488 |
T |
|
| Q |
235 |
taagatggaaccaatctccgtgtcatctcgaacacgtgtgttgaatgagtctactgttacttttgaatctaagcagaaaataactttcttaaactctaac |
334 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32011487 |
taagatggaaccaatctatgtgtcatctcgaacacgtgtgttgaatgagtctactgttacttttgaatctaagcagaaaataactttcttaaactataac |
32011388 |
T |
|
| Q |
335 |
tctcttacccatttgcatagcttctagtaatcctaaagcttctcttatatcagctgacataatcggttgcaaccatatatttttatcttccataggcatg |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
32011387 |
tctcttacccatttgcatagcttctagtaatcctaaagcttctattatatcagttgacataatcggttgcaaccatatagttttagcttccataggcatg |
32011288 |
T |
|
| Q |
435 |
tcgaattcatctcttaggcacattctaacacccactctatgatgatg |
481 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
32011287 |
tcgaattcatctcttagacacattctaacacccactctattatgatg |
32011241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 134 - 474
Target Start/End: Original strand, 8746529 - 8746869
Alignment:
| Q |
134 |
ggccgtcttgggaagattatgaacaaccatattattctttctcatagaaaactcgacataagagttgtta-aaatatcaggtaaagtaactccacaccta |
232 |
Q |
| |
|
||||||||| | ||| | |||| ||||||||||| || |||| |||||||||||||||||||||||||| |||||| || |||| | |||| ||||||| |
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| T |
8746529 |
ggccgtctttgcaagttcatgagcaaccatattagcctctctcctagaaaactcgacataagagttgttacaaatattagataaatttactctacaccta |
8746628 |
T |
|
| Q |
233 |
actaagatggaaccaatctccgtgtcatctcgaacacgtgtgttgaatgagtctactgttacttttgaatctaagcagaaaataactttcttaaactcta |
332 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| ||| |||||||||||||||| | ||||||||||||| ||||| ||||||||||| ||||| | |
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|
| T |
8746629 |
gctaagatggaaccaagctctgtgtcatctcgaacctgtgagttgaatgagtctactactccttttgaatctaaacagaagataactttcttgaactcca |
8746728 |
T |
|
| Q |
333 |
actctcttacccatttgcatagcttctagtaatcctaaagcttctcttatatcagctgacataatcggttgcaaccatatatttttatcttccataggca |
432 |
Q |
| |
|
| |||||||||||||| ||||||| ||||||||| | | ||||||| | | ||| |||||||||||||||||| ||| ||| ||||| || | ||| || |
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| T |
8746729 |
attctcttacccattt-catagctgctagtaatcatgatgcttctcctctgtcaactgacataatcggttgcagccaaatagttttagctcctataaaca |
8746827 |
T |
|
| Q |
433 |
tgtcgaattcatctcttaggcacattctaacacccactctat |
474 |
Q |
| |
|
| | ||||||||||||| |||||||||| ||||||||||| |
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|
| T |
8746828 |
taccaaattcatctcttaaacacattctaatacccactctat |
8746869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 2442222 - 2442165
Alignment:
| Q |
146 |
aagattatgaacaaccatattattctttctcatagaaaactcgacataagagttgtta |
203 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||||| | |||||||||||||||| |
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|
| T |
2442222 |
aagattatgagcaaccatattagtctatctcctagaaaatttgacataagagttgtta |
2442165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 178 - 447
Target Start/End: Original strand, 41289854 - 41290125
Alignment:
| Q |
178 |
tagaaaactcgacataagagttgttaa-aatatcaggtaaagtaactccacacctaactaagatggaaccaatctccgtgtcatctcgaacacgtgtgtt |
276 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| |||| |||||| ||||||| ||| ||||||||||| ||||| ||||||||||||| ||||||| |
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|
| T |
41289854 |
tagaaaaatcgacataagagttgttacgaatatcagataaattaactctacacctagctaggatggaaccaagctccgcgtcatctcgaacatgtgtgtt |
41289953 |
T |
|
| Q |
277 |
gaatgagtctactgt--tacttttgaatctaagcagaaaataactttcttaaactctaactctcttacccatttgcatagcttctagtaatcctaaagct |
374 |
Q |
| |
|
||| ||||||||| | |||||||||||||||||| | ||||| ||||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |
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|
| T |
41289954 |
gaacgagtctactatactacttttgaatctaagcaaacaataatcttcttaaactctagttctcttacccattt-catagctgctagtaattctaaagct |
41290052 |
T |
|
| Q |
375 |
tctcttatatcagctgacataatcggttgcaaccatatatttttatcttccataggcatgtcgaattcatctc |
447 |
Q |
| |
|
|||| | ||||| ||||||||||||||||||||||||| ||||| || ||||| |||||| |||||||||| |
|
|
| T |
41290053 |
tctcctttatcaattgacataatcggttgcaaccatatagttttagctcccataaacatgtcaaattcatctc |
41290125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 173 - 419
Target Start/End: Complemental strand, 6470864 - 6470618
Alignment:
| Q |
173 |
tctcatagaaaactcgacataagagttgtta-aaatatcaggtaaagtaactccacacctaactaagatggaaccaatctccgtgtcatctcgaacacgt |
271 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| |||| | |||| ||||||| ||||||||||||||| ||| |||||||||||||| || |
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|
| T |
6470864 |
tctcctagaaaactcgacataagagttgttacaaatatcagataaatttactctacacctagctaagatggaaccaagctctgtgtcatctcgaacttgt |
6470765 |
T |
|
| Q |
272 |
gtgttgaatgagtctactgttacttttgaatctaagcagaaaataactttcttaaactctaactctcttacccatttgcatagcttctagtaatcctaaa |
371 |
Q |
| |
|
| ||| |||||||||||| | ||||||||||||| ||||| ||||||||||| ||||| || ||||||||||| || ||||||| ||||||||| ||| |
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|
| T |
6470764 |
gagttcaatgagtctactactccttttgaatctaaacagaagataactttcttgaactccaattctcttaccca-ttccatagctgctagtaatcttaat |
6470666 |
T |
|
| Q |
372 |
gcttctcttatatcagctgacataatcggttgcaaccatatattttta |
419 |
Q |
| |
|
||||||| ||| ||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
6470665 |
gcttctcctatgtcaactgacataatcggttgcagccatataatttta |
6470618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 173 - 419
Target Start/End: Original strand, 6750366 - 6750612
Alignment:
| Q |
173 |
tctcatagaaaactcgacataagagttgtta-aaatatcaggtaaagtaactccacacctaactaagatggaaccaatctccgtgtcatctcgaacacgt |
271 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| |||| | |||| ||||||| ||||||||||||||| |||||||||||||||||| || |
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|
| T |
6750366 |
tctcctagaaaactcgacataagagttgttacaaatatcagataaatttactctacacctagctaagatggaaccaagctccgtgtcatctcgaacttgt |
6750465 |
T |
|
| Q |
272 |
gtgttgaatgagtctactgttacttttgaatctaagcagaaaataactttcttaaactctaactctcttacccatttgcatagcttctagtaatcctaaa |
371 |
Q |
| |
|
| ||| | |||||||||| | ||||||||||||| |||| ||||||||||| ||||| || ||||||||||| || ||||||| ||||||||| ||| |
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|
| T |
6750466 |
gagttcagtgagtctactactccttttgaatctaaaaagaagataactttcttgaactccaattctcttaccca-ttccatagctgctagtaatcttaat |
6750564 |
T |
|
| Q |
372 |
gcttctcttatatcagctgacataatcggttgcaaccatatattttta |
419 |
Q |
| |
|
||||||| ||| ||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
6750565 |
gcttctcctatgtcaactgacataatcggttgcagccatataatttta |
6750612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 152 - 419
Target Start/End: Complemental strand, 28695200 - 28694933
Alignment:
| Q |
152 |
atgaacaaccatattattctttctcatagaaaactcgacataagagttgtta-aaatatcaggtaaagtaactccacacctaactaagatggaaccaatc |
250 |
Q |
| |
|
|||| ||||||||||| || |||| |||||||||||| ||||||||||||| |||| ||| |||| | |||| ||||||| ||||||||||||||| | |
|
|
| T |
28695200 |
atgagcaaccatattagactgtctcctagaaaactcgaaataagagttgttacaaattccagataaatttactctacacctagctaagatggaaccaagc |
28695101 |
T |
|
| Q |
251 |
tccgtgtcatctcgaacacgtgtgttgaatgagtctactgttacttttgaatctaagcagaaaataactttcttaaactctaactctcttacccatttgc |
350 |
Q |
| |
|
|| |||||||||||||| || ||| | |||||||||| | |||| |||||||| ||||| ||||||||||| ||||| || ||| ||||||||| | |
|
|
| T |
28695100 |
tctgtgtcatctcgaacctctgagttcagtgagtctactactcctttagaatctaaacagaagataactttcttgaactccaattctattacccattc-c |
28695002 |
T |
|
| Q |
351 |
atagcttctagtaatcctaaagcttctcttatatcagctgacataatcggttgcaaccatatattttta |
419 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||| ||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
28695001 |
atagctgctagtaatcctaatgcttctcctatgtcaactgacataatcggttgcagccatatagtttta |
28694933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 152 - 419
Target Start/End: Original strand, 6955083 - 6955348
Alignment:
| Q |
152 |
atgaacaaccatattattctttctcatagaaaactcgacataagagttgtta-aaatatcaggtaaagtaactccacacctaactaagatggaaccaatc |
250 |
Q |
| |
|
|||| ||||||||||| ||| |||| |||||||||||||||||||||||||| |||||| || |||| | |||| |||||| ||||||||||||||| | |
|
|
| T |
6955083 |
atgagcaaccatattagtctctctcttagaaaactcgacataagagttgttacaaatattagataaatttactctacacct--ctaagatggaaccaagc |
6955180 |
T |
|
| Q |
251 |
tccgtgtcatctcgaacacgtgtgttgaatgagtctactgttacttttgaatctaagcagaaaataactttcttaaactctaactctcttacccatttgc |
350 |
Q |
| |
|
|| ||||||||||||||| ||| |||||||||||||||| | ||||||||||||| ||||| ||||||||||| ||||| || ||||||||||| || | |
|
|
| T |
6955181 |
tctgtgtcatctcgaacatgtgagttgaatgagtctactactccttttgaatctaaacagaagataactttcttgaactccaattctcttaccca-ttcc |
6955279 |
T |
|
| Q |
351 |
atagcttctagtaatcctaaagcttctcttatatcagctgacataatcggttgcaaccatatattttta |
419 |
Q |
| |
|
||||| ||||||||||| | ||||||| ||| ||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
6955280 |
atagcggctagtaatcctgatgcttctcctatgtcaactgacataatcggttgcagccatatagtttta |
6955348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 254 - 412
Target Start/End: Original strand, 34118690 - 34118847
Alignment:
| Q |
254 |
gtgtcatctcgaacacgtgtgttgaatgagtctactgttacttttgaatctaagcagaaaataactttcttaaactctaactctcttacccatttgcata |
353 |
Q |
| |
|
||||||||||||||| ||| ||| ||||| ||||| | ||||||||| ||| ||||| |||| |||||||||||| || |||||| |||| || || | |
|
|
| T |
34118690 |
gtgtcatctcgaacatgtgagttacatgaggctactactccttttgaatttaaacagaagataattttcttaaactccaattctcttgccca-ttccaga |
34118788 |
T |
|
| Q |
354 |
gcttctagtaatcctaaagcttctcttatatcagctgacataatcggttgcaaccatat |
412 |
Q |
| |
|
||| ||||||||||||| ||||||| | | ||| || ||||||||||||||| |||||| |
|
|
| T |
34118789 |
gctgctagtaatcctaatgcttctcctgtgtcaactaacataatcggttgcagccatat |
34118847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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