View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_62 (Length: 223)
Name: NF18398_high_62
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_62 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0199 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1669465 - 1669693
Alignment:
| Q |
1 |
atactaagcttgatattgagtaaatacatattagtatataaataagagtgttgg--------atcatgtcagcacaacatcatagttggttagagtctca |
92 |
Q |
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| T |
1669465 |
atactaagcttgatattgaccgaacacatattaatttataaataagagtattgggttagtatatcatgtcagcacagcatcatagttggttagagtctca |
1669564 |
T |
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| Q |
93 |
ttacttaaatgtattatatcaagttatcctttttataatgcatccaatcctataatttcaaccatgtgaaaaaacttcaaagctcacttcattcaatatg |
192 |
Q |
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| T |
1669565 |
ttacttaaatgt--tatatcaagttatcctttttataatgcatccaatcctataatttcaaccatgtgaaaaaacttcaaagctcacttcattaaatatg |
1669662 |
T |
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| Q |
193 |
cagacaccctgttttcaatgcaggaacttgt |
223 |
Q |
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| T |
1669663 |
caaacaccctgttttcaatgcaggaacttgt |
1669693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 1888677 - 1888501
Alignment:
| Q |
1 |
atactaagcttgatattgagtaaatacatattagtatataaataagagtgttgg--------atcatgtcagcacaacatcatagttggttagagtctca |
92 |
Q |
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||||||||||||| ||||| |||| |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1888677 |
atactaagcttgacattgactaaacacatattagtttataaataagagtattgggttagtatatcatgtcagcacaacatcatagttggttagagtctca |
1888578 |
T |
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| Q |
93 |
ttacttaaatgtattatatcaagttatcctttttataatgcatccaatcctataatttcaaccatgtgaaaaaactt |
169 |
Q |
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| T |
1888577 |
ttacttaaatgtattatatcaagttatcctttttataattcatccaatcctataatttcaaccatgtgaaaaaactt |
1888501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 1664939 - 1665044
Alignment:
| Q |
1 |
atactaagcttgatattgagtaaatacatattagtatataaataagagtgttgg--------atcatgtcagcacaacatcatagttggttagagtctca |
92 |
Q |
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||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
1664939 |
atactaagcttgaaattgactaaacacatattagtatataaataagagtattgggttagtatatcatgtcggcacaacatcatagttggttatagtctca |
1665038 |
T |
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| Q |
93 |
ttactt |
98 |
Q |
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|||||| |
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| T |
1665039 |
ttactt |
1665044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 1665096 - 1665137
Alignment:
| Q |
176 |
tcacttcattcaatatgcagacaccctgttttcaatgcagga |
217 |
Q |
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| T |
1665096 |
tcacttcattcaatatgcagacaccctgttttcaaggcagga |
1665137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 5997792 - 5997669
Alignment:
| Q |
53 |
ggatcatgtcagcacaacatcatagttggttagagtctcattacttaaatgtattatatcaagttatcctttttataatgcatccaat-cctataatttc |
151 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||||| ||| ||||||| |
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| T |
5997792 |
ggatcatgtcagcataacatcatagttggttagagtctcattactt--atgtattatatcctgttatcctttttatga-gcatccaatccctgtaatttc |
5997696 |
T |
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| Q |
152 |
aaccatgtgaaaaaacttcaaagctca |
178 |
Q |
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| T |
5997695 |
aaccaagtgaaaaaacttcaaagctca |
5997669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 7380 - 7485
Alignment:
| Q |
1 |
atactaagcttgatattgagtaaatacatattagtatataaataagagtgttgg--------atcatgtcagcacaacatcatagttggttagagtctca |
92 |
Q |
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||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
7380 |
atactaagcttgaaattgactaaacacatattagtatataaataagagtattgggttagtatatcatgtcggcacaacatcatagttggttatagtctca |
7479 |
T |
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| Q |
93 |
ttactt |
98 |
Q |
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|||||| |
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| T |
7480 |
ttactt |
7485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 7537 - 7578
Alignment:
| Q |
176 |
tcacttcattcaatatgcagacaccctgttttcaatgcagga |
217 |
Q |
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| T |
7537 |
tcacttcattcaatatgcagacaccctgttttcaaggcagga |
7578 |
T |
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