View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_65 (Length: 211)
Name: NF18398_high_65
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_65 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 47393394 - 47393574
Alignment:
| Q |
14 |
gaaacaaaatatacattttgaagaagatgactctctagcattatatatggaatggtgttcttatctctcaacaaatatgaagagattgtctttgattgta |
113 |
Q |
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| T |
47393394 |
gaaacaaaatatacattttaaagaagatgactctctagcattatatatggagtggtgttcttatctctcaacaaatatgaagaaattgtctttgattgta |
47393493 |
T |
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| Q |
114 |
tgagacaacaaaacaagcaggagtaaggcaaatgtaagatgaagatataaacaagagtctagttctatcgacgttggatac |
194 |
Q |
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| T |
47393494 |
tgagacaacaaaacaagcaggagtaaggcaaatgtaagatgaagacataaacaagagtctagttatatcgacgttggatac |
47393574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 36391902 - 36391722
Alignment:
| Q |
14 |
gaaacaaaatatacattttgaagaagatgactctctagcattatatatggaatggtgttcttatctctcaacaaatatgaagagattgtctttgattgta |
113 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36391902 |
gaaacaaaatatacattttaaagaagatgactctctagcattatatatggagtggtgttcttatctctcaacaaatatgaagaaattgtctttgattgta |
36391803 |
T |
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| Q |
114 |
tgagacaacaaaacaagcaggagtaaggcaaatgtaagatgaagatataaacaagagtctagttctatcgacgttggatac |
194 |
Q |
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| T |
36391802 |
tgagacaacaaaacaagcaggagtaaggcaaatgtaagatgaagacataaacaagagtctagttatatcgacgttggatac |
36391722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 19428756 - 19428690
Alignment:
| Q |
60 |
atggaatggtgttcttatctctcaacaaatatgaagagattgtctttgattgtatgagacaacaaaa |
126 |
Q |
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| T |
19428756 |
atggagtggtgttcttatctcttaatgaatatgaagaaattgtctttgacgatatgaggcaacaaaa |
19428690 |
T |
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