View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_7 (Length: 480)
Name: NF18398_high_7
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Complemental strand, 26837244 - 26836784
Alignment:
| Q |
8 |
tagcataggacataaaacattagaagagagtaagaat----attaaccagtaatgagattcatatctgtgggaacaatgcactcatcatagccagtatca |
103 |
Q |
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| T |
26837244 |
tagcagaggacataaaacattagaagagagtaagaatgaatattaaccagtaatgagattcatatctgtgggaacaatgcactcatcatagccagtatca |
26837145 |
T |
|
| Q |
104 |
tcgtcctccccagtctcagcagggagacgggttccatgaccactatagtggacaaagaacacgtcaccaggttgagccgatcgaaccaacctagacatgg |
203 |
Q |
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| T |
26837144 |
tcgtcctccccggtctcagcagggagacgggtgccatgaccactatagtggacaaagaacacgtcaccaggttgagccgatcgaaccaacctagacatgg |
26837045 |
T |
|
| Q |
204 |
cagatcgaatgttcttgccagtaggttgggtgtaagaatggtctgtgtcaataagaacagtgatatccttatctgagaaaccatatttgtgaatgaggca |
303 |
Q |
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| T |
26837044 |
cagatcgaatgttcttgccagtaggttgggtgtaagaatggtctgtgtcaataagaacagtgatatccttatctgagaaaccatatttgtgaatgaggca |
26836945 |
T |
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| Q |
304 |
tttgtgcatcctccacacatcgttaatgcacccttttagctcagcctttgttccttgatagttgcaccctatcaatactgccttcttagccatttcacgc |
403 |
Q |
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| T |
26836944 |
tttgtgcatcctccacacatcgttaatgcacccttttagctcagcctttgttcctggatagttgcaccctatcaatactgccttcttagccatttcacgc |
26836845 |
T |
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| Q |
404 |
atgcaactggtcacctctccaatctctcccttattatctttgaattttagagagggaggag |
464 |
Q |
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| T |
26836844 |
atgcaactggtcacctctccaatctctcccttattatctttgaattttagagagggaggag |
26836784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 18452945 - 18452834
Alignment:
| Q |
48 |
aaccagtaatgagattcatatctgtgggaacaatgcactcatcatagccagtatcatcgtcctccccagtctcagcagggagacgggttccatgaccact |
147 |
Q |
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||||||| |||||||||||||| | |||||||| || |||||| | ||||||||||| ||||| ||||| |||||||| ||||| || ||||| ||||| |
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| T |
18452945 |
aaccagtgatgagattcatatcagaaggaacaatacattcatcaaaaccagtatcatcatcctctccagtttcagcaggaagacgagtaccatgtccact |
18452846 |
T |
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| Q |
148 |
atagtggacaaa |
159 |
Q |
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| T |
18452845 |
ataatgaacaaa |
18452834 |
T |
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