View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_high_9 (Length: 454)
Name: NF18398_high_9
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 2518239 - 2517821
Alignment:
| Q |
19 |
tttcttaatacatcatatgtttcacaaagcttgtcaatgacttttctcccaactcctttcacttcaaccgcatgtccatcttgataacataaagcaacct |
118 |
Q |
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| T |
2518239 |
tttcttaatacatcatatgtttcacaaagcttgtcaatgacttttctcccaactcctttcacttcaaccgcatgtccatcttgataacataaagcaacct |
2518140 |
T |
|
| Q |
119 |
aaacaacaatgtttgattatttatgatgttagaaatcatgaataggtatgtttttcacatatgcacat-cacaacgaaacatgatatattttgagaatga |
217 |
Q |
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| T |
2518139 |
aaacaacaatgtttgattatttatgatgttagaaatcatgaataggtatgtttttcacatatgcacatacacaacgaaacatgatatattttgagaatga |
2518040 |
T |
|
| Q |
218 |
gaagaacatacattgtagtgatagaagtagccgtcattcttgctcaggccaactcgaaaatggttcgctaagagttgtatcttggctccctcggatccaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2518039 |
gaagaacatacattgtagtgatagaagtagccgtcattcttgctcaggccaactcgaaaatggttcgctaagagttgtatcttggctcccttggatccaa |
2517940 |
T |
|
| Q |
318 |
gacctctcctggccatgggcacatggtttgaattcaatgtctttctcatttcctcattgttcaatgagtattccatttcttagatcctgctgaaaataag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517939 |
gacctctcctggccatgggcacatggtttgaattcaatgtctttctcatttcctcattgttcaatgagtattccatttcttagatcctgctgaaaataag |
2517840 |
T |
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| Q |
418 |
atcaaaattttgggtattc |
436 |
Q |
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||||||||||||||||||| |
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| T |
2517839 |
atcaaaattttgggtattc |
2517821 |
T |
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