View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18398_low_1 (Length: 726)

Name: NF18398_low_1
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18398_low_1
NF18398_low_1
[»] chr5 (10 HSPs)
chr5 (1-716)||(40181177-40181893)
chr5 (414-702)||(38605675-38605960)
chr5 (543-631)||(40180547-40180635)
chr5 (486-622)||(41885856-41885992)
chr5 (563-694)||(38604989-38605120)
chr5 (218-279)||(40180938-40180999)
chr5 (131-166)||(38606229-38606264)
chr5 (644-686)||(41885995-41886037)
chr5 (237-306)||(38606068-38606137)
chr5 (249-306)||(41885617-41885674)
[»] chr1 (1 HSPs)
chr1 (218-702)||(46358821-46359300)
[»] chr8 (12 HSPs)
chr8 (212-398)||(44459244-44459430)
chr8 (212-398)||(44466777-44466963)
chr8 (511-699)||(44459540-44459725)
chr8 (511-699)||(44467073-44467258)
chr8 (419-702)||(44460150-44460430)
chr8 (419-702)||(44467683-44467963)
chr8 (563-702)||(34502246-34502382)
chr8 (237-306)||(34502619-34502688)
chr8 (131-162)||(44459145-44459176)
chr8 (131-162)||(44466678-44466709)
chr8 (237-319)||(44459962-44460044)
chr8 (237-319)||(44467495-44467577)
[»] chr6 (1 HSPs)
chr6 (554-702)||(410919-411068)


Alignment Details
Target: chr5 (Bit Score: 641; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Complemental strand, 40181893 - 40181177
Alignment:
Q  1 acgaagaattcctaaccctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgtttacatatcgtgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181893 acgaagaattcctaaccctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgtttacatatcgtgac 40181794  T
Q  101 aacgacgacaacgtcatcaccgcctccaaagatttccagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtacaacaaagacttga 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181793 aacgacgacaacgtcatcaccgcctccaaagatttacagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtacaacaaagacttga 40181694  T
Q  201 ccaatctagttcaacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaa 300  Q
    |||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40181693 ccaatctagttcaacatcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaa 40181594  T
Q  301 tcttatatacttcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40181593 tcttatatacttcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactactgttcac 40181494  T
Q  401 tatgattttaatgttaaactaaggaagaaatacatatt-ttttctgtgggacatgcttaagaaaattggccgctatgaacctgactttcttaacgcaagg 499  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||||    
T  40181493 tatgatttcaatgttaaactaaggaagaaatacatatttttttctgtgggacatgcttaagtatattggccgctatgaaactgactttcttaatgcaagg 40181394  T
Q  500 attctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaa 599  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181393 attctcaataaactcatagaatccttctcagttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaa 40181294  T
Q  600 atcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 699  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  40181293 atcaagatacatattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaagcagagtctatctatcaaaagttgct 40181194  T
Q  700 gctactccatgatgatg 716  Q
    |||||||||||||||||    
T  40181193 gctactccatgatgatg 40181177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 414 - 702
Target Start/End: Complemental strand, 38605960 - 38605675
Alignment:
Q  414 ttaaactaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaacctgactttcttaacgcaaggattctaaataaact 513  Q
    ||||||||||||||||  ||||| |||||||||||||  |||||||||| |||||||  ||| || | | | |||||||| ||   ||||| ||| | ||    
T  38605960 ttaaactaaggaagaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaaccggccttcttaacccacccattctcaatcacct 38605861  T
Q  514 catagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttat 613  Q
    |||| ||| ||||||  |||| || |   |||| ||| | |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || |||    
T  38605860 catacaattcttctcaattataggtcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatat 38605761  T
Q  614 tactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 702  Q
    |||| |||||| |||||||||||   || ||||| ||||||||||||||| ||||||||| |  ||||||||| |||||| ||||||||    
T  38605760 tactttacacttcaagctctttt---gaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 38605675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 543 - 631
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  543 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 631  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 486 - 622
Target Start/End: Original strand, 41885856 - 41885992
Alignment:
Q  486 ttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatt 585  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||  |||||||||   |||| || || ||||  |||||||||||||| ||||| |  ||    
T  41885856 ttcttaacgctcggattctaaataaactaatagaattcttctcaattatggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttt 41885955  T
Q  586 tcaatgtgtgccaaatcaagatacttattactataca 622  Q
    |||||||| ||||||||||||||| ||||||| ||||    
T  41885956 tcaatgtgagccaaatcaagatacatattactttaca 41885992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 694
Target Start/End: Complemental strand, 38605120 - 38604989
Alignment:
Q  563 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 662  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  663 tgatccaccaaacagcttctatctatcaaaag 694  Q
    || |||| ||| | |||||||||| |||||||    
T  38605020 tgctccagcaagccgcttctatctgtcaaaag 38604989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
Q  218 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac 279  Q
    ||||||||| | ||| || ||||||||||| |||||||||||||||||||||| | ||||||    
T  40180999 catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac 40180938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 38606264 - 38606229
Alignment:
Q  131 gatttccagaaagtgatgagtcttcttagtaatgct 166  Q
    |||||||| |||||||||||||||||||||||||||    
T  38606264 gatttccataaagtgatgagtcttcttagtaatgct 38606229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 686
Target Start/End: Original strand, 41885995 - 41886037
Alignment:
Q  644 acaaggtgtagtgctgatatgatccaccaaacagcttctatct 686  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
T  41885995 acaaggagtagtgatgatatgatccaccaaactgcttctatct 41886037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 38606137 - 38606068
Alignment:
Q  237 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 306  Q
    ||||||||||| |||||||||||||||| ||||||| | |||||| ||| ||  ||||||| || |||||    
T  38606137 tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat 38606068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 41885617 - 41885674
Alignment:
Q  249 aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 306  Q
    ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| ||||    
T  41885617 aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttat 41885674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 218 - 702
Target Start/End: Original strand, 46358821 - 46359300
Alignment:
Q  218 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataa 317  Q
    ||||||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||| ||||    
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  318 agatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcactatgattttaatgttaa 417  Q
    || || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  |  |||| |  | |||| |  |  ||||  |||| || |    
T  46358921 agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcagaaatatg--ccgctggttccactgatgataatattca 46359018  T
Q  418 actaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaacctgactttcttaacgcaaggattctaaataaactcata 517  Q
     |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| |  ||||| |||||| | | |||||||| ||| ||||| ||    
T  46359019 tctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactccta 46359118  T
Q  518 gaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattact 617  Q
     | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  |     
T  46359119 cactcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcc 46359218  T
Q  618 atacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 702  Q
    |||| ||||||||| ||||   || ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  46359219 atacgctgcaagctttttt---gaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 46359300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 212 - 398
Target Start/End: Original strand, 44459244 - 44459430
Alignment:
Q  212 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 311  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44459244 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44459343  T
Q  312 tcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 398  Q
    | |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44459344 ttataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44459430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 212 - 398
Target Start/End: Original strand, 44466777 - 44466963
Alignment:
Q  212 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 311  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44466777 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44466876  T
Q  312 tcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 398  Q
    | |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44466877 ttataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44466963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 511 - 699
Target Start/End: Original strand, 44459540 - 44459725
Alignment:
Q  511 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 610  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44459540 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44459639  T
Q  611 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 699  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44459640 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44459725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 511 - 699
Target Start/End: Original strand, 44467073 - 44467258
Alignment:
Q  511 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 610  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44467073 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44467172  T
Q  611 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 699  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44467173 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44467258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 419 - 702
Target Start/End: Original strand, 44460150 - 44460430
Alignment:
Q  419 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaacctgactttcttaacgcaaggattctaaataaactcatag 518  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| |  ||||| |||||| | | |||||||| ||| ||||| ||     
T  44460150 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44460249  T
Q  519 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 618  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44460250 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44460349  T
Q  619 tacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 702  Q
    ||| ||||||||| ||||||    ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44460350 tacgctgcaagcttttttgac---cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44460430  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 419 - 702
Target Start/End: Original strand, 44467683 - 44467963
Alignment:
Q  419 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaacctgactttcttaacgcaaggattctaaataaactcatag 518  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| |  ||||| |||||| | | |||||||| ||| ||||| ||     
T  44467683 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44467782  T
Q  519 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 618  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44467783 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44467882  T
Q  619 tacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 702  Q
    ||| ||||||||| ||||||    ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44467883 tacgctgcaagcttttttgac---cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44467963  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 563 - 702
Target Start/End: Complemental strand, 34502382 - 34502246
Alignment:
Q  563 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 662  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||   || |||||| ||||   ||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctctttt---gatcacaagatgtatcactgata 34502286  T
Q  663 tgatccaccaaacagcttctatctatcaaaagttgctgct 702  Q
    ||| ||||||| | |||||||||| ||||||| |||||||    
T  34502285 tgacccaccaagccgcttctatctgtcaaaagatgctgct 34502246  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 34502688 - 34502619
Alignment:
Q  237 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 306  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| ||||||||    
T  34502688 tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttat 34502619  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 44459145 - 44459176
Alignment:
Q  131 gatttccagaaagtgatgagtcttcttagtaa 162  Q
    ||||||||||||||||||||||||||||||||    
T  44459145 gatttccagaaagtgatgagtcttcttagtaa 44459176  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 44466678 - 44466709
Alignment:
Q  131 gatttccagaaagtgatgagtcttcttagtaa 162  Q
    ||||||||||||||||||||||||||||||||    
T  44466678 gatttccagaaagtgatgagtcttcttagtaa 44466709  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 44459962 - 44460044
Alignment:
Q  237 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 319  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44459962 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44460044  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 44467495 - 44467577
Alignment:
Q  237 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 319  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44467495 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44467577  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 702
Target Start/End: Original strand, 410919 - 411068
Alignment:
Q  554 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 653  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||   || |||| || |||||||||| || |  ||||| || |    
T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagctctttttagaacaacaagttgca 411018  T
Q  654 gtgc-tgatatgatccaccaaacagcttctatctatcaaaagttgctgct 702  Q
    || | | ||||| |||| ||| | |||||||||| ||||||| |||||||    
T  411019 gtactttatatgctccagcaagcggcttctatctgtcaaaagatgctgct 411068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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