View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_11 (Length: 448)
Name: NF18398_low_11
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 21 - 439
Target Start/End: Complemental strand, 33116524 - 33116105
Alignment:
| Q |
21 |
tcctgtatcattgattcgtatgtatatattttgcttgtttttagctttttcatcccctgtattaagagtgataattttatgtccccatcagaatacaagt |
120 |
Q |
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| T |
33116524 |
tcctgtatcattgattcgtatgcatatattctgcttgtttttagctttttcatcccctgtattatgagtgataattttatgtccccatcagaatacaagt |
33116425 |
T |
|
| Q |
121 |
tattttaaaactcaaccaactataacttcccactctcacctcattacaactataaagagaacttggccttatttttcccaggggttatctgtttagtctt |
220 |
Q |
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| T |
33116424 |
tattttaaaactcaaccaactataaattcccactctcacctcattacaactataaagagaacttgaccttatttttcccaggggttatctgtttagtctt |
33116325 |
T |
|
| Q |
221 |
tttaatgctttca-nnnnnnngttaatttctaataggggacatctatgcccaaccnnnnnnnngttcttgttataattccttgcatatgagttttgataa |
319 |
Q |
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| T |
33116324 |
tttaatgctttcattttttttgttaatttctaataggggacatctatgcccaaccttttttttgttcttgttataattccttgcagatgagttttgataa |
33116225 |
T |
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| Q |
320 |
tgcagtgcttaataccatttgcttgatcatggaaacttttatatcaattgcatttcgttgtctatgatttcaattaccaagtaagtaattattatttcat |
419 |
Q |
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| T |
33116224 |
tgcagtgcttaataccatttgcttgatcatggaaacttttatatcaattgcatttcattgtctatgatttcaattaccaagtaagtaattattatttcat |
33116125 |
T |
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| Q |
420 |
tgctgagcctccgttcatct |
439 |
Q |
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| T |
33116124 |
tgctgagcctccgttcatct |
33116105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 408
Target Start/End: Complemental strand, 33167927 - 33167804
Alignment:
| Q |
284 |
ttcttgttataattccttgcatatgagttttgat---aatgcagtgcttaataccatttgcttgatcatggaaacttttatatcaattgcatttcgttgt |
380 |
Q |
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||||||||| || |||||| | ||||||| |||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |
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| T |
33167927 |
ttcttgttacaagtccttgtagatgagttatgatgctaatgtagtgcttaataccatttgtttg----tggaaacttttatatcaattgcatttcattgt |
33167832 |
T |
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| Q |
381 |
ctatgatttcaattaccaagtaagtaat |
408 |
Q |
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| T |
33167831 |
ctatgatttcaactatcaagtaattaat |
33167804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 33168024 - 33167984
Alignment:
| Q |
193 |
ttttcccaggggttatctgtttagtctttttaatgctttca |
233 |
Q |
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| T |
33168024 |
ttttcccaagggttgtctgtttagtctttttaatggtttca |
33167984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 44826147 - 44826201
Alignment:
| Q |
289 |
gttataattccttgcatatgagttttgataatgcagtgcttaataccatttgctt |
343 |
Q |
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| T |
44826147 |
gttataagtccttacagattagttatgataatgcagtgcttaataccatttgctt |
44826201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 52689957 - 52690029
Alignment:
| Q |
167 |
caactataaagagaacttggccttat------ttttcccaggggttatctgtttagtctttttaatgctttca |
233 |
Q |
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| T |
52689957 |
caactataaagagaacttggctttttgcttgattttcccaagggttgtctgtttagtctttttaatgatttca |
52690029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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