View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_12 (Length: 446)
Name: NF18398_low_12
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Complemental strand, 15841850 - 15841431
Alignment:
| Q |
12 |
catcatcaatctggaggggtactaaagattatctttttagtgcttttgtgctcccctggcgctccgttcactaattagcctttaattttggttttccagg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841850 |
catcatcaatctggaggggtactaaagattatctttttagtgcttttgtgctcccctggcgctccgttcactaattagcctttaattttggttttccagg |
15841751 |
T |
|
| Q |
112 |
agcgatcagtttcaacaattgtttatcttgtttcccttcaagatcttacaaactgcccatttcgagttgttgatgagattaaccaaggttggttattcgt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841750 |
agcgatcagtttcaacaattgtttatcttgtttcccttcaagatcttacaaactgcccatttcgagttgttgatgagattaaccaaggttggttattcgt |
15841651 |
T |
|
| Q |
212 |
tgaagtaaattctttctggattaatggcactcagcactcaaatgatcttctttgactannnnnnnnatcaggcatggacccaataaatgaaaggaagatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
15841650 |
tgaagtaaattctttctggattaatggcactcagcactcaaatgatcttctttgactattttttttatcaggcatggacccaataaatgaaaggaagatg |
15841551 |
T |
|
| Q |
312 |
tttcagcaactagtgagagcagcaagcaagccaaatacaccacagtgagtactcctaactactattacttgatattttcagttcggttgtttaaaatttg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841550 |
tttcagcaactagtgagagcagcaagcaagccaaatacaccacagtgagtactcctaactactattacttgatattttcagttcggttgtttaaaatttg |
15841451 |
T |
|
| Q |
412 |
atattaaaacttgatgaata |
431 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
15841450 |
atattaaaacttgatgaata |
15841431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Complemental strand, 15827610 - 15827195
Alignment:
| Q |
12 |
catcatcaatctggaggggtactaaagattatctttttagtgcttttgtgctcccctggcgctccgttcactaattagcctttaattttggttttccagg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| |||||||||| ||||||||||| |
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|
| T |
15827610 |
catcatcaatctggaggggtactaaagattatctttttagtgcttttgtgctccccttgttctccgttcaccaattaacctttaatttcggttttccagg |
15827511 |
T |
|
| Q |
112 |
agcgatcagtttcaacaattgtttatcttgtttcccttcaagatcttacaaactgcccatttcgagttgttgatgagattaaccaaggttggttattcgt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |
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| T |
15827510 |
agcgatcagtttcaacaattgtttatcttgtttcccttcaagatcttacaaactgcccatttcgagttgttgatgaaatcaaccaaggttggttatttgt |
15827411 |
T |
|
| Q |
212 |
tgaagtaaattctttctggattaatggcactcagcactcaaatgatcttctttgactannnnnnnnatcaggcatggacccaataaatgaaaggaagatg |
311 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
15827410 |
tgaagtaaattctttctggattaacggaactcaacactcaaatgatcttctttgact----tttttatcagggatggacccaataaatgaaaggaagatg |
15827315 |
T |
|
| Q |
312 |
tttcagcaactagtgagagcagcaagcaagccaaatacaccacagtgagtactcctaactactattacttgatattttcagttcggttgtttaaaatttg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
15827314 |
tttcagcaactagtgagagcagcaagcaagccaagtacaccacagtgagtactcctaactactattacttgatattttcagttcggtcgattaaaatttg |
15827215 |
T |
|
| Q |
412 |
atattaaaacttgatgaata |
431 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
15827214 |
atattaaaacttgatgaata |
15827195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 79 - 426
Target Start/End: Complemental strand, 15822095 - 15821754
Alignment:
| Q |
79 |
tcactaattagcctttaattttggttttccaggagcgatcagtttcaacaattgtttatcttgtttcccttcaagatcttacaaactgcccatttcgagt |
178 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || | |
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|
| T |
15822095 |
tcactaattaacctctaattttggttatccaggagcgatcagtttcaactattgtttatcttgtttcccttcaagatcctacaaactgcccattttgatt |
15821996 |
T |
|
| Q |
179 |
tgttgatgagattaaccaaggttggttattcgttgaagtaaattctttctggattaatggcactcagcactcaaatgatcttctttgactannnnnnnna |
278 |
Q |
| |
|
||| |||||||| || ||||||||||||||| ||||||||||| ||||| ||||||| ||| |||| ||| |||||||||| ||||| | |
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| T |
15821995 |
tgtggatgagatcaatcaaggttggttattctttgaagtaaatcctttcaggattaacggc--tcagaactgaaatgatctt---tgact-ctattttca |
15821902 |
T |
|
| Q |
279 |
tcaggcatggacccaataaatgaaaggaagatgtttcagcaactagtgagagcagcaagcaagccaaatacaccacagtgagtactcctaactactatta |
378 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |
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| T |
15821901 |
tcagggatggacccaataaatgagaggaagatgtttcagcaactagtgagagcagcaagcaagccaaatacgccacagcgagtactactaactactatta |
15821802 |
T |
|
| Q |
379 |
cttgatattttcagttcggttgtttaaaatttgatattaaaacttgat |
426 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
15821801 |
cttgatctttttggttcctttgtttaaaatttgatattaaaacttgat |
15821754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 82 - 361
Target Start/End: Original strand, 10706171 - 10706447
Alignment:
| Q |
82 |
ctaattagcctttaattttggttttccaggagcgatcagtttcaacaattgtttatcttgtttcccttcaagatcttacaaactgcccatttcgagttgt |
181 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
10706171 |
ctaattaacctttaaatttggttttccaggaacgatcagtttcaactattgtttatcttgtttcacttcaagatcttacaaactgcccatttagagttgt |
10706270 |
T |
|
| Q |
182 |
tgatgagattaaccaaggttggttattcgttgaagtaaattctttctggattaatggcactcagcactcaaatgatcttctttgactannnnnnnnatca |
281 |
Q |
| |
|
||||||||| || |||||||||||| || || | |||||||||||||| |||| ||| ||||||||| ||||||| ||||| |||| |
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|
| T |
10706271 |
tgatgagatcaatcaaggttggttagtctttagaataaattctttctggtttaaccgcagagagcactcaagagatcttcattgac---actttgtatca |
10706367 |
T |
|
| Q |
282 |
ggcatggacccaataaatgaaaggaagatgtttcagcaactagtgagagcagcaagcaagccaaatacaccacagtgagt |
361 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10706368 |
ggaatggatccaataaatgaaaggaagatgtttcagcaactagtgagagcagcaagcaagccaaatacaccacagtgagt |
10706447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 82 - 364
Target Start/End: Original strand, 47447918 - 47448200
Alignment:
| Q |
82 |
ctaattagcctttaattttggttttccaggagcgatcagtttcaacaattgtttatcttgtttcccttcaagatcttacaaactgcccatttcgagttgt |
181 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
47447918 |
ctaattaacctttaaatttggttttccaggagcgatcagtttcaactattgtttatcttgtttctcttcaagatcttacaaactgcccatttagagttgt |
47448017 |
T |
|
| Q |
182 |
tgatgagattaaccaaggttggttattcgttgaagtaaattctttctggattaatggcactcagcactcaaatgatcttctttgactannnnnnnnatca |
281 |
Q |
| |
|
||||||||| ||||||||||||||| || || |||||||||||| ||| | || | | | ||||| || || |||| |||| | |||| |
|
|
| T |
47448018 |
tgatgagatcaaccaaggttggttagtctttagagtaaattctttttggttcaaccgtagactgcacttaagagaccttcattgattcctttttttatca |
47448117 |
T |
|
| Q |
282 |
ggcatggacccaataaatgaaaggaagatgtttcagcaactagtgagagcagcaagcaagccaaatacaccacagtgagtact |
364 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47448118 |
ggaatggatccaataaatgaaaggaagatgtttcagcaactagtgagagcagcaagcaagccaaatacaccacagtgagtact |
47448200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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