View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18398_low_13 (Length: 440)

Name: NF18398_low_13
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18398_low_13
NF18398_low_13
[»] chr3 (17 HSPs)
chr3 (12-440)||(26289971-26290400)
chr3 (397-440)||(2620083-2620126)
chr3 (376-437)||(8383221-8383283)
chr3 (368-440)||(41961680-41961753)
chr3 (377-440)||(55401040-55401104)
chr3 (397-440)||(10268516-10268559)
chr3 (398-440)||(9800027-9800069)
chr3 (398-440)||(10954939-10954981)
chr3 (402-440)||(24633757-24633795)
chr3 (402-440)||(32804570-32804608)
chr3 (376-440)||(10335316-10335381)
chr3 (403-440)||(12703999-12704036)
chr3 (403-440)||(14840321-14840358)
chr3 (376-440)||(24205071-24205136)
chr3 (396-440)||(5441061-5441105)
chr3 (392-440)||(39756217-39756265)
chr3 (392-440)||(40052313-40052361)
[»] chr6 (21 HSPs)
chr6 (376-440)||(5732540-5732605)
chr6 (396-437)||(677822-677863)
chr6 (399-440)||(17341694-17341735)
chr6 (376-440)||(25096387-25096452)
chr6 (368-440)||(34595090-34595163)
chr6 (396-440)||(16833293-16833337)
chr6 (400-440)||(19040341-19040381)
chr6 (397-440)||(426544-426587)
chr6 (397-440)||(7265623-7265666)
chr6 (397-440)||(7930291-7930334)
chr6 (397-440)||(9027164-9027207)
chr6 (397-440)||(9658865-9658908)
chr6 (392-439)||(12868706-12868753)
chr6 (397-440)||(19044450-19044493)
chr6 (397-440)||(20371140-20371183)
chr6 (397-439)||(8777004-8777046)
chr6 (367-436)||(34073381-34073451)
chr6 (376-440)||(13360402-13360467)
chr6 (376-440)||(16766661-16766726)
chr6 (399-440)||(32313392-32313433)
chr6 (377-440)||(25038101-25038165)
[»] chr5 (17 HSPs)
chr5 (376-440)||(41995435-41995500)
chr5 (397-440)||(9449455-9449498)
chr5 (396-440)||(27144448-27144492)
chr5 (397-440)||(7175049-7175092)
chr5 (393-432)||(9878070-9878109)
chr5 (397-440)||(17123034-17123077)
chr5 (397-440)||(19552573-19552616)
chr5 (397-440)||(30098312-30098355)
chr5 (397-439)||(3966489-3966531)
chr5 (395-433)||(6035467-6035505)
chr5 (402-440)||(28588704-28588742)
chr5 (398-440)||(35017024-35017066)
chr5 (377-437)||(19820427-19820488)
chr5 (392-440)||(2436903-2436951)
chr5 (396-440)||(13808598-13808642)
chr5 (392-440)||(31084304-31084352)
chr5 (400-436)||(38816729-38816765)
[»] chr7 (23 HSPs)
chr7 (376-439)||(26329413-26329477)
chr7 (380-440)||(2425763-2425824)
chr7 (377-440)||(27945006-27945070)
chr7 (397-440)||(1433440-1433483)
chr7 (395-438)||(6630944-6630987)
chr7 (397-440)||(21828435-21828478)
chr7 (397-440)||(22868028-22868071)
chr7 (397-440)||(32308106-32308149)
chr7 (396-440)||(5307245-5307289)
chr7 (396-440)||(9408364-9408408)
chr7 (373-440)||(11722128-11722196)
chr7 (396-440)||(15902807-15902851)
chr7 (397-440)||(23191882-23191925)
chr7 (400-437)||(8046060-8046097)
chr7 (399-440)||(22602740-22602781)
chr7 (396-440)||(5233614-5233658)
chr7 (396-440)||(5835232-5835276)
chr7 (377-440)||(7438671-7438735)
chr7 (404-440)||(19206043-19206079)
chr7 (398-438)||(20549778-20549818)
chr7 (396-440)||(25791638-25791682)
chr7 (404-440)||(29787399-29787435)
chr7 (373-440)||(43249954-43250022)
[»] chr1 (17 HSPs)
chr1 (377-440)||(10572619-10572683)
chr1 (396-440)||(36878446-36878490)
chr1 (397-440)||(2896151-2896194)
chr1 (397-440)||(17831561-17831604)
chr1 (398-440)||(609488-609530)
chr1 (392-437)||(21530670-21530715)
chr1 (392-440)||(22881646-22881694)
chr1 (400-440)||(34298425-34298465)
chr1 (397-440)||(398795-398838)
chr1 (397-440)||(6427336-6427379)
chr1 (397-440)||(9103626-9103669)
chr1 (397-440)||(16812529-16812572)
chr1 (379-440)||(7918241-7918303)
chr1 (397-439)||(37598818-37598860)
chr1 (403-440)||(9828036-9828073)
chr1 (392-440)||(10475007-10475055)
chr1 (396-440)||(13997868-13997912)
[»] chr8 (10 HSPs)
chr8 (397-440)||(4786368-4786411)
chr8 (377-440)||(24362232-24362296)
chr8 (397-437)||(31109551-31109591)
chr8 (397-440)||(15816159-15816202)
chr8 (397-440)||(39954309-39954352)
chr8 (397-439)||(36450785-36450827)
chr8 (397-434)||(9382958-9382995)
chr8 (392-440)||(13844626-13844674)
chr8 (396-440)||(20679425-20679469)
chr8 (396-440)||(24669418-24669462)
[»] chr4 (11 HSPs)
chr4 (379-437)||(40742558-40742617)
chr4 (397-440)||(36635310-36635353)
chr4 (396-437)||(21539900-21539941)
chr4 (390-435)||(35723420-35723465)
chr4 (377-440)||(12895304-12895368)
chr4 (397-440)||(903908-903951)
chr4 (410-440)||(5775388-5775418)
chr4 (283-321)||(23824188-23824226)
chr4 (397-434)||(17345451-17345488)
chr4 (396-440)||(19482653-19482697)
chr4 (361-440)||(21945452-21945532)
[»] scaffold0022 (1 HSPs)
scaffold0022 (377-437)||(90808-90869)
[»] chr2 (13 HSPs)
chr2 (396-440)||(12464879-12464923)
chr2 (380-440)||(21782848-21782909)
chr2 (377-440)||(11670720-11670784)
chr2 (397-440)||(2331780-2331823)
chr2 (397-440)||(21616748-21616791)
chr2 (397-440)||(30404880-30404923)
chr2 (397-435)||(15972859-15972897)
chr2 (379-440)||(31018557-31018619)
chr2 (368-440)||(896169-896240)
chr2 (397-437)||(1239693-1239733)
chr2 (397-437)||(16069287-16069327)
chr2 (396-440)||(37411274-37411318)
chr2 (392-440)||(38117189-38117237)
[»] scaffold0306 (1 HSPs)
scaffold0306 (397-440)||(13386-13429)
[»] scaffold0152 (1 HSPs)
scaffold0152 (397-440)||(21898-21941)
[»] scaffold0018 (2 HSPs)
scaffold0018 (397-440)||(192279-192322)
scaffold0018 (397-437)||(178852-178892)
[»] scaffold0697 (1 HSPs)
scaffold0697 (392-437)||(1625-1670)
[»] scaffold0085 (1 HSPs)
scaffold0085 (396-440)||(26378-26422)
[»] scaffold0004 (1 HSPs)
scaffold0004 (397-440)||(92793-92836)
[»] scaffold0003 (1 HSPs)
scaffold0003 (367-440)||(241549-241623)
[»] scaffold0007 (1 HSPs)
scaffold0007 (376-440)||(225298-225363)


Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Original strand, 26289971 - 26290400
Alignment:
Q  12 tcatcatgtaaagcttatctagggaagctctaagtaaataggaattgtaagtgaatggaaagagcaaatttgcttaaaaatacaaacggagatgtaaatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26289971 tcatcatgtaaagcttatctagggaagctctaagtaaataggaattgtaagtgaatggaaagagcaaatttgcttaaaaatacaaacggagatgtaaatt 26290070  T
Q  112 caggggtcatcgaa-aatactgatctacatatataaccatcggggaaaatgtgaatcaacaaggagacatcttaagtagtgttgtcaatcacggatagtg 210  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26290071 cacgggtcatcgaacaatactgatctacatatataaccatcggggaaaatgtgaatcaacaaggagacatcttaagtagtgttgtcaatcacggattgtg 26290170  T
Q  211 gaatatagcggtatgttcaaattatgcaaagctacaaggttataacaactattttactgattcatgtgttgcagaataatagcaatttgttaaaattccg 310  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26290171 gaatatagcggtatgttcaaattatgctaagctacaaggttataacaactattttactgattcatgtgttgcagaataatagcaatttgttaaaattccg 26290270  T
Q  311 ctaagctatagagttttagcaccgttatttgacaacacaggcctaattaattttactctataaagcacggacactggatacgacaagacactgacacgcc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  26290271 ctaagctatagagttttagcaccgttatttgacaacacaggcctaattaattttactctataaagcaccgacaccggatacgacaagacactgacacgcc 26290370  T
Q  411 gacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||||||||||||    
T  26290371 gacaccattaataatttgagaaaatcacat 26290400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 2620126 - 2620083
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  2620126 gacactgacacgccgacaccactaatcatttgagaaaatcacat 2620083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 8383221 - 8383283
Alignment:
Q  376 cacggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatca 437  Q
    ||||||||||||| |||||| | ||| |||||||||||||||  |||||||||||||||||||    
T  8383221 cacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatca 8383283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 41961753 - 41961680
Alignment:
Q  368 ctataaagcacggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| |||||||||||| ||| |||||| |||||||||||||||| ||| | ||||||||||| || |||||||    
T  41961753 ctatgaagcacggacaccggacacgacacagacactgacacgccgtcacaactaataatttgaaaatatcacat 41961680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 55401040 - 55401104
Alignment:
Q  377 acggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||| |||||||||| | ||||||| |||||||||| | ||||||||||| ||||||||||    
T  55401040 acggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacat 55401104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 10268559 - 10268516
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||  |||||||||||| ||||||||||    
T  10268559 gacactgacacgccgacacagttaataatttgaaaaaatcacat 10268516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 440
Target Start/End: Original strand, 9800027 - 9800069
Alignment:
Q  398 acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||  ||||||||||||||||| ||||    
T  9800027 acactgacacgccgacacctctaataatttgagaaaattacat 9800069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 440
Target Start/End: Original strand, 10954939 - 10954981
Alignment:
Q  398 acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||| | ||||||||||| ||||||||||    
T  10954939 acactgacacgccgacacaactaataatttgaaaaaatcacat 10954981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 24633757 - 24633795
Alignment:
Q  402 tgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  24633757 tgacatgccgacaccactaataatttgagaaaatcacat 24633795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 32804608 - 32804570
Alignment:
Q  402 tgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  32804608 tgacatgccgacaccgttaataatttgagaaaatcacat 32804570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 10335381 - 10335316
Alignment:
Q  376 cacggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||| ||| |||||| | |||||||||||||||||| | ||||||||||| ||| ||||||    
T  10335381 cacggacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaagtcacat 10335316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 12703999 - 12704036
Alignment:
Q  403 gacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  12703999 gacacgccgacaccactaataatttgagaaaagcacat 12704036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Complemental strand, 14840358 - 14840321
Alignment:
Q  403 gacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  14840358 gacacgccaacaccattaataatttcagaaaatcacat 14840321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 24205136 - 24205071
Alignment:
Q  376 cacggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||| ||| |||||| | ||||||||||||||||||   ||||||||||||||||| ||||    
T  24205136 cacggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacat 24205071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 5441105 - 5441061
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||| ||||  ||| ||||||||||||||||||    
T  5441105 agacactgacacgccgtcaccgctaaaaatttgagaaaatcacat 5441061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 39756217 - 39756265
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| ||||||||||||||||||  ||||||||||| | ||||||||||    
T  39756217 gacacgacactgacacgccgacaaaattaataatttaaaaaaatcacat 39756265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 40052313 - 40052361
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| |||||||||||||||||||   ||||||||||| ||||||||||    
T  40052313 gacacgacactgacacgccgacacagctaataatttgaaaaaatcacat 40052361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 5732605 - 5732540
Alignment:
Q  376 cacggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  5732605 cacggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacat 5732540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 677822 - 677863
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatca 437  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  677822 agacactgacacgccgacactgttaataatttgagaaaatca 677863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 17341735 - 17341694
Alignment:
Q  399 cactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  17341735 cactgacacgccgacaccgttaataatttgataaaatcacat 17341694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 25096387 - 25096452
Alignment:
Q  376 cacggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||  |||||| ||| |||||| |||||| |||||||| ||||||||||||||||||||||    
T  25096387 cacggacatcggatacaacacagacaccgacacgacgacaccactaataatttgagaaaatcacat 25096452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 34595090 - 34595163
Alignment:
Q  368 ctataaagcacggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| |||||||||||| ||| |||||| | ||| |||||||||||||| | ||||||||||| ||||||||||    
T  34595090 ctatgaagcacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacat 34595163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 16833293 - 16833337
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||    
T  16833293 agacactgacacgccgacacaactaataatttgaaaaaatcacat 16833337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 19040341 - 19040381
Alignment:
Q  400 actgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  19040341 actgacacgccgacaccgctaataatttgagaaaatcacat 19040381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 426587 - 426544
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||  |||||||||||| ||||||||||    
T  426587 gacactgacacgccgacacagttaataatttgaaaaaatcacat 426544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 7265666 - 7265623
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||| |||||  ||||||||||||||||||||||    
T  7265666 gacactgacacgccaacaccgctaataatttgagaaaatcacat 7265623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 7930291 - 7930334
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||    
T  7930291 gacactgacatgccgacacaattaataatttgaaaaaatcacat 7930334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 9027164 - 9027207
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||    
T  9027164 gacactgacacgccgacaccgctaataatttgagataatcacat 9027207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 9658865 - 9658908
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||    
T  9658865 gacactgacacgccgacaccgctaataatttaagaaaatcacat 9658908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 439
Target Start/End: Complemental strand, 12868753 - 12868706
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatcaca 439  Q
    |||| |||||||||||||||||||  |||||||||||| |||||||||    
T  12868753 gacacgacactgacacgccgacacagttaataatttgaaaaaatcaca 12868706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 19044450 - 19044493
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||| | |||||||||||||| |||||||    
T  19044450 gacactgacacgccgacacgactaataatttgagaatatcacat 19044493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 20371183 - 20371140
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| |||||||||||||||  ||||||||||||||||||||||    
T  20371183 gacattgacacgccgacaccgctaataatttgagaaaatcacat 20371140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 8777046 - 8777004
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcaca 439  Q
    ||||||||||||||||||| | ||||||||||| |||||||||    
T  8777046 gacactgacacgccgacacaactaataatttgaaaaaatcaca 8777004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 436
Target Start/End: Complemental strand, 34073451 - 34073381
Alignment:
Q  367 tctataaagcacggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatc 436  Q
    ||||| |||||||||||||||| ||||||  |||||||||| ||| ||| |  ||||||||||||||||||    
T  34073451 tctatgaagcacggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatc 34073381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 13360467 - 13360402
Alignment:
Q  376 cacggacactggatacgacaaga-cactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||| |||| | || ||| |||||| |||||||| || |||||||||||||||||||    
T  13360467 cacggacactggacacgatacgaacacagacacgtcgacaccactagtaatttgagaaaatcacat 13360402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 16766661 - 16766726
Alignment:
Q  376 cacggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||| ||| |||||| | ||||||||||||||||||   ||||||||||| ||||||||||    
T  16766661 cacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacat 16766726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 32313392 - 32313433
Alignment:
Q  399 cactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||| |||||| |||||||||| ||||    
T  32313392 cactgacacgccgacaccaataataagttgagaaaataacat 32313433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 25038165 - 25038101
Alignment:
Q  377 acggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||| || |||||||| ||| |||||||||  |||||| |||||||||||||||||| ||||    
T  25038165 acggacattgaatacgacacagatactgacacgttgacaccgttaataatttgagaaaattacat 25038101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 41995435 - 41995500
Alignment:
Q  376 cacggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||| |||||||||||||||||||| | |||||||| || ||||||||||    
T  41995435 cacggacactggatacgacacagacactgacacgccgacacaactaataattcgaaaaaatcacat 41995500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 9449455 - 9449498
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||    
T  9449455 gacactggcacgccgacaccaataataatttgagaaaatcacat 9449498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 27144448 - 27144492
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||||  |||||||||||| |||||||||    
T  27144448 agacactgacacgccgacaccgctaataatttgaggaaatcacat 27144492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 7175092 - 7175049
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||  ||||||| |||||||||||||||||||||||    
T  7175092 gacactgacacatcgacaccgttaataatttgagaaaatcacat 7175049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 432
Target Start/End: Complemental strand, 9878109 - 9878070
Alignment:
Q  393 acaagacactgacacgccgacaccattaataatttgagaa 432  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  9878109 acaagacactgacacgtcgacaccaataataatttgagaa 9878070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 17123034 - 17123077
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||| |||||  ||||||||||||||||||||||    
T  17123034 gacactgacacgccaacaccgctaataatttgagaaaatcacat 17123077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 19552616 - 19552573
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||  |||||||||||| ||||||||||    
T  19552616 gacactgacacgccgacacagttaataatttgaaaaaatcacat 19552573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 30098312 - 30098355
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||    
T  30098312 gacactgacacgacgaaaccgttaataatttgagaaaatcacat 30098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 3966489 - 3966531
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcaca 439  Q
    |||||||||| |||||||||  |||||||||||||||||||||    
T  3966489 gacactgacatgccgacaccgctaataatttgagaaaatcaca 3966531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 6035467 - 6035505
Alignment:
Q  395 aagacactgacacgccgacaccattaataatttgagaaa 433  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  6035467 aagacactgacacgccgacaccgctaataatttgagaaa 6035505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 28588742 - 28588704
Alignment:
Q  402 tgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  28588742 tgacacgccgacaccggtaataatttgagaaaatcacat 28588704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 440
Target Start/End: Original strand, 35017024 - 35017066
Alignment:
Q  398 acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| |||||||||| |||| ||||||||||||||||||||||    
T  35017024 acaccgacacgccgaaaccactaataatttgagaaaatcacat 35017066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 19820488 - 19820427
Alignment:
Q  377 acggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatca 437  Q
    |||||||| ||| |||||| | |||||||||| ||||||||  |||||||||||||||||||    
T  19820488 acggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatca 19820427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 2436903 - 2436951
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| ||||||||||||||||||||  ||||||||||  ||||||||||    
T  2436903 gacacgacactgacacgccgacaccgctaataatttgcaaaaatcacat 2436951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 13808642 - 13808598
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||| ||| ||||| ||||| |||||||||||||||||||    
T  13808642 agacactgatacgtcgacatcattattaatttgagaaaatcacat 13808598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 31084304 - 31084352
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| |||||||||||||||||||   ||||||||||| ||||||||||    
T  31084304 gacacgacactgacacgccgacacagctaataatttgaaaaaatcacat 31084352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 38816765 - 38816729
Alignment:
Q  400 actgacacgccgacaccattaataatttgagaaaatc 436  Q
    |||||||||||||||||  ||||||||||||||||||    
T  38816765 actgacacgccgacaccgctaataatttgagaaaatc 38816729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 376 - 439
Target Start/End: Complemental strand, 26329477 - 26329413
Alignment:
Q  376 cacggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcaca 439  Q
    ||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||| ||||    
T  26329477 cacggacactggacacgacacagacactgacacgccgacatcgttaataatttgagaaaaacaca 26329413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 2425824 - 2425763
Alignment:
Q  380 gacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||||||    
T  2425824 gacactggacacgacacagatactgacacgccggcaccgttaataatttgagaaaatcacat 2425763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 27945006 - 27945070
Alignment:
Q  377 acggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||| ||| |||||| | |||||||||||||||||||| ||||||||||||||||| ||||    
T  27945006 acggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacat 27945070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 1433440 - 1433483
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| ||||||||||||||| |||||||||||||||||||||||    
T  1433440 gacattgacacgccgacaccgttaataatttgagaaaatcacat 1433483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 6630987 - 6630944
Alignment:
Q  395 aagacactgacacgccgacaccattaataatttgagaaaatcac 438  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  6630987 aagacactgacacgccgacaccactaataatttgagaaagtcac 6630944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 21828478 - 21828435
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  21828478 gacactgacacgccgacaccgttagtaatttgagaaaatcacat 21828435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 22868028 - 22868071
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||    
T  22868028 gacactgacacgccgacaccactaataatatgagaaaatcacat 22868071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 32308106 - 32308149
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  32308106 gacactgacacgccgacaccgctaataatttgagaaaatcacat 32308149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 5307245 - 5307289
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||    
T  5307245 agacattgacacgccgacaccacttataatttgagaaaatcacat 5307289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 9408408 - 9408364
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||    
T  9408408 agacactgacacaccgacacaattaataatttgaaaaaatcacat 9408364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 11722196 - 11722128
Alignment:
Q  373 aagcacggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||| || ||| |||||| | |||||||||||||||||||  ||| ||||||||||||||||||    
T  11722196 aagcacggataccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatcacat 11722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 15902807 - 15902851
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||    
T  15902807 agacactgacatgccgacaccaataataatttgataaaatcacat 15902851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 23191882 - 23191925
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||| |||||||||||  ||||||||||||||||||||||    
T  23191882 gacactgatacgccgacaccgctaataatttgagaaaatcacat 23191925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 437
Target Start/End: Complemental strand, 8046097 - 8046060
Alignment:
Q  400 actgacacgccgacaccattaataatttgagaaaatca 437  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  8046097 actgacacgccaacaccactaataatttgagaaaatca 8046060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 22602781 - 22602740
Alignment:
Q  399 cactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||| | ||| |||||||||||||||||    
T  22602781 cactgacacgccgacaccgtaaattatttgagaaaatcacat 22602740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 5233614 - 5233658
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||| |||| ||  |||||||||||||||||||||||    
T  5233614 agacactgacacaccgatacggttaataatttgagaaaatcacat 5233658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 5835232 - 5835276
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||| |||||||||||| ||||| ||||||||||| ||||    
T  5835232 agacactgatacgccgacaccactaatagtttgagaaaataacat 5835276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 7438671 - 7438735
Alignment:
Q  377 acggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||  |||||||||| | ||||||||| ||||||||  |||||||||||| ||||||||||    
T  7438671 acggacatcggatacgacataaacactgacatgccgacacagttaataatttgaaaaaatcacat 7438735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 19206043 - 19206079
Alignment:
Q  404 acacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||  ||||||||||||||||||||||    
T  19206043 acacgccgacaccgctaataatttgagaaaatcacat 19206079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 20549778 - 20549818
Alignment:
Q  398 acactgacacgccgacaccattaataatttgagaaaatcac 438  Q
    |||||||||| ||||||||  ||||||||||||||||||||    
T  20549778 acactgacacaccgacaccgctaataatttgagaaaatcac 20549818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 25791638 - 25791682
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||||  |||| |||||||||| ||||||    
T  25791638 agacactgacacgccgacaccgctaattatttgagaaattcacat 25791682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 29787435 - 29787399
Alignment:
Q  404 acacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||  ||||||||||||||||||||||    
T  29787435 acacgccgacaccgctaataatttgagaaaatcacat 29787399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 43249954 - 43250022
Alignment:
Q  373 aagcacggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||| ||| | |||| | ||||||||||||||||||   ||||||||||||||||| ||||    
T  43249954 aagcacggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaatgacat 43250022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 10572683 - 10572619
Alignment:
Q  377 acggacactggatacgacaaga-cactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||| ||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||    
T  10572683 acggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacat 10572619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 36878446 - 36878490
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  36878446 agacactgacacgccgacaccgctaataatttgagaaaatcacat 36878490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 2896194 - 2896151
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  2896194 gacactgacacgccgacaccgctaataatttgagaaaatcacat 2896151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 17831604 - 17831561
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  17831604 gacactgacacgccgacaccgctaataatttgagaaaatcacat 17831561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 440
Target Start/End: Complemental strand, 609530 - 609488
Alignment:
Q  398 acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  609530 acactgacacgccgacaccactaataatttgagaaaattacat 609488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 21530670 - 21530715
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatca 437  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||    
T  21530670 gacatgacacagacacgccgacaccgttaataatttgagaaaatca 21530715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 22881694 - 22881646
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| ||||||||||||||||||| | ||||||||||| ||||||||||    
T  22881694 gacacgacactgacacgccgacacaactaataatttgaaaaaatcacat 22881646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 34298425 - 34298465
Alignment:
Q  400 actgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  34298425 actgacacaccgacaccactaataatttgagaaaatcacat 34298465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 398838 - 398795
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||    
T  398838 gacactgacacgccgacaccgctaataatttgaaaaaatcacat 398795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 6427336 - 6427379
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||| |||||  ||||||||||||||||||||||    
T  6427336 gacactgacacgccaacaccgctaataatttgagaaaatcacat 6427379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 9103626 - 9103669
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||  |||||||||||| ||||||||||    
T  9103626 gacactgacacgccgacacagttaataatttgaaaaaatcacat 9103669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 16812529 - 16812572
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||||    
T  16812529 gacactgacacaccgacaccaataataatttgacaaaatcacat 16812572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 7918303 - 7918241
Alignment:
Q  379 ggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||| ||| |||||| ||||| |||||||| |||| || ||||||||||||||||||||||    
T  7918303 ggacaccggacacgacacagacaatgacacgctgacatcactaataatttgagaaaatcacat 7918241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 37598818 - 37598860
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcaca 439  Q
    ||||||||||||||||||| | ||||||||||| |||||||||    
T  37598818 gacactgacacgccgacacaactaataatttgaaaaaatcaca 37598860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 9828036 - 9828073
Alignment:
Q  403 gacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  9828036 gacacgccgacaccactaataatttgataaaatcacat 9828073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 10475055 - 10475007
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| |||| |||||||||||||||  |||||| |||||||||||||||    
T  10475055 gacacgacattgacacgccgacaccgctaataacttgagaaaatcacat 10475007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 13997868 - 13997912
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||| ||||| |||| | ||||||||||    
T  13997868 agacactgacacgccgacaccgttaattatttaaaaaaatcacat 13997912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 4786411 - 4786368
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  4786411 gacactgacacgccgacaccattaataatttaagaaaatcacat 4786368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 24362296 - 24362232
Alignment:
Q  377 acggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||| |||||||||| |||||| ||||||||||||||  ||||||||||||| ||||||||    
T  24362296 acggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacat 24362232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 31109591 - 31109551
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatca 437  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  31109591 gacactgacacgccgacaccgttaataatttgagaaaatca 31109551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 15816202 - 15816159
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||    
T  15816202 gacactgacacgccgacacaactaataatttgaaaaaatcacat 15816159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 39954352 - 39954309
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||    
T  39954352 gacaccgacacgccgacaccgctaataatttgagaaaatcacat 39954309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 36450827 - 36450785
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcaca 439  Q
    ||||||||||||||||||| | ||||||||||| |||||||||    
T  36450827 gacactgacacgccgacacaactaataatttgaaaaaatcaca 36450785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Original strand, 9382958 - 9382995
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaa 434  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  9382958 gacactgacacgccgataccatgaataatttgagaaaa 9382995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 13844674 - 13844626
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| ||||| |||||||||||||   ||||||||||||||||||||||    
T  13844674 gacacgacacggacacgccgacactgctaataatttgagaaaatcacat 13844626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 20679469 - 20679425
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||| | |||||||  ||||||||||||||||||||||    
T  20679469 agacactgacatgtcgacacccctaataatttgagaaaatcacat 20679425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 24669418 - 24669462
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||| |||||| ||||||||||||| |||| ||||    
T  24669418 agacactgacacgctgacaccgttaataatttgaggaaattacat 24669462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Original strand, 40742558 - 40742617
Alignment:
Q  379 ggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatca 437  Q
    ||||||||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||    
T  40742558 ggacactggatacgacacggacattgaaacgccgacaccattaataatttgagaaaatca 40742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 36635310 - 36635353
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  36635310 gacactgacacgccaacaccactaataatttgagaaaatcacat 36635353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 21539941 - 21539900
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatca 437  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  21539941 agacactgacatgccgacaccattaataatttaagaaaatca 21539900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 35723465 - 35723420
Alignment:
Q  390 acgacaagacactgacacgccgacaccattaataatttgagaaaat 435  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||    
T  35723465 acgacatgacactgacacgccgacaccgctaataatttgagaaaat 35723420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 12895368 - 12895304
Alignment:
Q  377 acggacactggatacgacaaga-cactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||| |||||||||| || || |||||||||||||| | ||||||||||| ||||||||||    
T  12895368 acggacaccggatacgacacgaacaatgacacgccgacacaaataataatttgaaaaaatcacat 12895304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 903908 - 903951
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||    
T  903908 gacactgacacaccggcaccgttaataatttgagaaaatcacat 903951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 440
Target Start/End: Complemental strand, 5775418 - 5775388
Alignment:
Q  410 cgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||||||||||||||    
T  5775418 cgacaccattaataatttgagaaaatcacat 5775388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 23824226 - 23824188
Alignment:
Q  283 agaataatagcaatttgttaaaattccgctaagctatag 321  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  23824226 agaataatagcaatttgttcaaattcagctaagctatag 23824188  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 434
Target Start/End: Complemental strand, 17345488 - 17345451
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaa 434  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  17345488 gacactgacacgccgacaccgctaataatttgagaaaa 17345451  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 19482653 - 19482697
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||| | ||||||||||| || |||||||    
T  19482653 agacactgacacgccgacacaactaataatttgaaaatatcacat 19482697  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 21945452 - 21945532
Alignment:
Q  361 ttttactctataaagcacggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| |||||| |||||||||||| ||| | |||| ||||||||||| ||||||||   ||||||||||| ||||| ||||    
T  21945452 ttttgctctatgaagcacggacaccggacatgacacagacactgacatgccgacacagctaataatttgaaaaaatgacat 21945532  T

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Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 90808 - 90869
Alignment:
Q  377 acggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatca 437  Q
    ||||| |||||| |||||| |||||||||||| || ||||||||||||||||||||||||||    
T  90808 acggatactggacacgacacagacactgacacaccaacaccattaataatttgagaaaatca 90869  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 12464923 - 12464879
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  12464923 agacactgacacgccgacaccaataataatttgagaaaatgacat 12464879  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 21782909 - 21782848
Alignment:
Q  380 gacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||| |||||| | ||||||||||||||||||   ||||||||||||||||||||||    
T  21782909 gacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcacat 21782848  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 11670720 - 11670784
Alignment:
Q  377 acggacactggatacgaca-agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||| | |||||||| ||||||||||||| |||| ||| ||||||||||| ||||||||||    
T  11670720 acggacaccgaatacgacatagacactgacacgtcgacgccactaataatttgaaaaaatcacat 11670784  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 2331780 - 2331823
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| ||||||||  |||||||||||||||||||||||||||||    
T  2331780 gacattgacacgcaaacaccattaataatttgagaaaatcacat 2331823  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 21616748 - 21616791
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||    
T  21616748 gacacggacacgccgacaccgctaataatttgagaaaatcacat 21616791  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 30404923 - 30404880
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||  |||||||||||| ||||||||||    
T  30404923 gacactgacacgccgacacggttaataatttgaaaaaatcacat 30404880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 15972859 - 15972897
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaat 435  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  15972859 gacactgacacgccgacacaattaataatttgaaaaaat 15972897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 31018557 - 31018619
Alignment:
Q  379 ggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||| |||||||||| | ||||||||||||| |||||  ||||||||| ||||||||||||    
T  31018557 ggacaccggatacgacatggacactgacacgccaacaccgctaataatttcagaaaatcacat 31018619  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 896169 - 896240
Alignment:
Q  368 ctataaagcacggacactggatacgacaagacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| ||||| |||||| ||| ||||||  ||||||||||||||||||   ||||| ||||||||||||||||    
T  896169 ctatgaagcatggacaccggacacgacac-acactgacacgccgacactgctaatagtttgagaaaatcacat 896240  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 1239733 - 1239693
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatca 437  Q
    ||||| |||||||||||| |||||||||||| |||||||||    
T  1239733 gacacggacacgccgacatcattaataatttaagaaaatca 1239693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 16069327 - 16069287
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatca 437  Q
    |||||||||||||||||||| |||||||||| | |||||||    
T  16069327 gacactgacacgccgacaccgttaataatttaaaaaaatca 16069287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 37411318 - 37411274
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| |||||| |||||||||  ||||||||||||||||||||||    
T  37411318 agacgctgacatgccgacaccgctaataatttgagaaaatcacat 37411274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 38117237 - 38117189
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||| |||||||||||||||||||   ||||||||||| ||||||||||    
T  38117237 gacacgacactgacacgccgacacagctaataatttgaaaaaatcacat 38117189  T

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Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 13386 - 13429
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  13386 gacactgacacgccgacacaactaataatttgagaaaatcacat 13429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 21941 - 21898
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  21941 gacactgacacgccgacacaactaataatttgagaaaatcacat 21898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 192322 - 192279
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  192322 gacactgacacgccgacaccgttaataatttgagaaaattacat 192279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 178892 - 178852
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatca 437  Q
    ||||||||||||||||||| | ||||||||||| |||||||    
T  178892 gacactgacacgccgacacaactaataatttgaaaaaatca 178852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 1625 - 1670
Alignment:
Q  392 gacaagacactgacacgccgacaccattaataatttgagaaaatca 437  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||    
T  1625 gacatgacacagacacgccgacaccgttaataatttgagaaaatca 1670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 26378 - 26422
Alignment:
Q  396 agacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||||    
T  26378 agacagtgacacgtcgacaccactaataatttgagaaaatcacat 26422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 92793 - 92836
Alignment:
Q  397 gacactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||    
T  92793 gacactgacacgccgacaccgctaataatttgagaaaattacat 92836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 440
Target Start/End: Original strand, 241549 - 241623
Alignment:
Q  367 tctataaagcacggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||| |||||||||||| ||| |||||| | ||||||||||||||||||   ||||||||||  ||||||||||    
T  241549 tctatgaagcacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacat 241623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 225363 - 225298
Alignment:
Q  376 cacggacactggatacgacaag-acactgacacgccgacaccattaataatttgagaaaatcacat 440  Q
    ||||||||| ||| |||||| | ||||||||||||||||||   ||||||||||||||||| ||||    
T  225363 cacggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacat 225298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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