View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_14 (Length: 440)
Name: NF18398_low_14
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 31929353 - 31929111
Alignment:
| Q |
19 |
agatcggttggttagatcaattggaccacacattgagaacatattcaatctatttaggagaatcaagctatcaaatccatatttctattggataagagtt |
118 |
Q |
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| T |
31929353 |
agatcggttggttagatcaattggaccacacattgagaacatattcaatctatttaggagaatcaatctatcaaatccatatttctattggataagagtt |
31929254 |
T |
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| Q |
119 |
gacgtcaacaaattgaaattggattgaatcggcgcaattgaacttggtggaggaaccacataactaattatcgatggactctaagtctaaaaggtattga |
218 |
Q |
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| T |
31929253 |
gacgtcaacaaattgaaattggattgaatcggcgcaattgaagttgatggaggaaccacataactaattatcgatggactctaagtctaaaaggtattga |
31929154 |
T |
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| Q |
219 |
aattttacaaaaatgattagtagacttagatccccgagaatac |
261 |
Q |
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| T |
31929153 |
aattttacaaaaatgattagtaaacttagatccccgagaatac |
31929111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 31897395 - 31897164
Alignment:
| Q |
19 |
agatcggttggttagatcaattggaccacacattgagaacatattcaatctatttaggagaatcaagctatcaaatccatatttctattggataagagtt |
118 |
Q |
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|||||||||| || || ||||||||||| ||||||| | ||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||| |
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| T |
31897395 |
agatcggttgtttcgaccaattggaccatacattgatagcatattcaagctatttaggaggatcaagctatcagatccatatttctatttgataagagtt |
31897296 |
T |
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| Q |
119 |
gacgtcaacaaattgaaattggattgaatcggcgcaattgaacttggtggaggaaccacataactaattatcgatggactctaagtctaaaaggtattga |
218 |
Q |
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| T |
31897295 |
gacgtcagcaaattgaaattggattgaatcgacgcaattgaacttgatggaggaaccacataactaattattgatgaactctaggtctaaagggtattga |
31897196 |
T |
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| Q |
219 |
aattttacaaaaatgattagtagacttagatc |
250 |
Q |
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| T |
31897195 |
aattttacaaaaatgattagtaaacttagatc |
31897164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 31863181 - 31862934
Alignment:
| Q |
11 |
cataggctagatcggttggttagatcaattggaccacacattgagaacatattcaatctatttaggagaatcaagctatcaaatccatatttctattgga |
110 |
Q |
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||||||| | |||||||||| ||| |||||| | || | |||||| |||||||||| ||| ||| ||| |||||||||||| ||| | | || |||| || |
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| T |
31863181 |
cataggccaaatcggttggtcagaccaattgaatcatatattgagcacatattcaagctacttatgaggatcaagctatcagatctagaattatattaga |
31863082 |
T |
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| Q |
111 |
taagagttgacgtcaacaaattgaaattggattgaatcggcgcaattgaacttggtggaggaaccacataactaattatcgatggactctaagtctaaaa |
210 |
Q |
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| T |
31863081 |
taagagttgaggtcagaaaattgaaattggattgaatcggctcaattgaatttgatggaggaaccacataactaattatcaatggactctaagtctaaga |
31862982 |
T |
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| Q |
211 |
ggtattgaaattttacaaaaatgattagtagacttagatccccgagaa |
258 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
31862981 |
ggtagtgaaattttacaaaaatgattagtaaacttagatccccaagaa |
31862934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 337 - 424
Target Start/End: Complemental strand, 31929035 - 31928948
Alignment:
| Q |
337 |
cacaatagaaaagtataagatgaaatgaggaagaaacgacggcggaaacttttaatagaacaagtgacaagaaaggaggtgtggattt |
424 |
Q |
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| T |
31929035 |
cacaatagaaaagtataagatgaaatgaggaagaaacggcggcggaaacttttaatagaacaagtgacaagaaaggaggtgtggattt |
31928948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 31870633 - 31870744
Alignment:
| Q |
12 |
ataggctagatcggttggttagatcaattggaccacacattgagaacatattcaatctatttaggagaatcaagctatcaaatccatatttctattggat |
111 |
Q |
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|||| |||||||||||||| ||| ||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
31870633 |
atagactagatcggttggtcagaccaactggaccatacattgagcacatattcaagctatttaggagaatcaagctatcagatccagatttctattagat |
31870732 |
T |
|
| Q |
112 |
aagagttgacgt |
123 |
Q |
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|||||||||||| |
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| T |
31870733 |
aagagttgacgt |
31870744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 337 - 416
Target Start/End: Complemental strand, 31897079 - 31897000
Alignment:
| Q |
337 |
cacaatagaaaagtataagatgaaatgaggaagaaacgacggcggaaacttttaatagaacaagtgacaagaaaggaggt |
416 |
Q |
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| T |
31897079 |
cacaatagagaagtataagatgaaatgaggaagaaacgacggcggaaacttttaatacaacaagtgacaagaaaggaggt |
31897000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 424
Target Start/End: Complemental strand, 31862856 - 31862769
Alignment:
| Q |
338 |
acaatagaaaagtataagatgaaatgaggaagaaacg--acggcggaaacttttaatagaacaagtgacaagaaaggaggtgtggattt |
424 |
Q |
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|||||||| ||||||||||||||||||||| |||||| | ||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
31862856 |
acaatagagaagtataagatgaaatgaggacgaaacggcaaggcggcgac-tttaatagaacaagtgacaagaaaggaggtgtggattt |
31862769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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