View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_17 (Length: 416)
Name: NF18398_low_17
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_17 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 31321463 - 31321857
Alignment:
| Q |
20 |
acttaatcacaataataagagacaaagcaagtggacaagtaaaaacagagggaagaatcagctacaaattgaattcaattgatagagagaatatgagagc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31321463 |
acttaatcacaataataagagacaaagcaagtggacaagtaaaaacagagggaagaatcagctacaaattgaattcaattgacagagagaatatgagagc |
31321562 |
T |
|
| Q |
120 |
tggtttacaacaaggactaagaattctaatagcagcaggagcagttgaagtaggaacacacagaagtgatggtcagagaattaagtgtaatgagaacact |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321563 |
tggtttacaacaaggactaagaattctaatagcagcaggagcagttgaagtaggaacacacagaagtgatggtcagagaattaagtgtaatgagaacact |
31321662 |
T |
|
| Q |
220 |
ggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321663 |
ggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtggccaggtgagaattggaatttgtatacttctgctcatcaaa |
31321762 |
T |
|
| Q |
320 |
tggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtctgtgctgct |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
31321763 |
tggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtttgtgatgct |
31321857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 28 - 414
Target Start/End: Original strand, 31333724 - 31334110
Alignment:
| Q |
28 |
acaataataagagacaaagcaagtggacaagtaaaaacagagggaagaatcagctacaaattgaattcaattgatagagagaatatgagagctggtttac |
127 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| || | ||||||||||||||| ||| ||| |
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| T |
31333724 |
acaataataagagacaaagctggtggacaagtaacaacagagcgaagaatcagctacaaattgaattcaatcgacaaagagaatatgagagccggtatac |
31333823 |
T |
|
| Q |
128 |
aacaaggactaagaattctaatagcagcaggagcagttgaagtaggaacacacagaagtgatggtcagagaattaagtgtaatgagaacactggcgaaaa |
227 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || || |
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| T |
31333824 |
aacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaattaagtgtaatgagaacaccagtgagaa |
31333923 |
T |
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| Q |
228 |
ggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatggggagt |
327 |
Q |
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| T |
31333924 |
ggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagt |
31334023 |
T |
|
| Q |
328 |
tgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtctgtgctgct |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
31334024 |
tgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtttgtgatgct |
31334110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 2200 - 2010
Alignment:
| Q |
28 |
acaataataagagacaaagcaagtggacaagtaaaaacagagggaagaatcagctacaaattgaattcaattgatagagagaatatgagagctggtttac |
127 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| || | ||||||||||||||| ||| ||| |
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| T |
2200 |
acaataataagagacaaagctggtggacaagtaacaacagagcgaagaatcagctacaaattgaattcaatcgacaaagagaatatgagagccggtatac |
2101 |
T |
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| Q |
128 |
aacaaggactaagaattctaatagcagcaggagcagttgaagtaggaacacacagaagtgatggtcagagaattaagtgtaatgagaacac |
218 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2100 |
aacaagcactaagaattttaatagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaattaagtgtaatgagaacac |
2010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 22513672 - 22513561
Alignment:
| Q |
80 |
gctacaaattgaattcaattgatagagagaa-tatgagagctggtttacaacaaggactaagaattctaatagcagcaggagcagttgaagtaggaacac |
178 |
Q |
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||||||||||||||||||||||||| || || ||||||||||||||||||||||| | | || ||||| |||||||||||| |||||||||||| ||||| |
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| T |
22513672 |
gctacaaattgaattcaattgatagggaaaaatatgagagctggtttacaacaagcaatgaggattctgatagcagcaggaacagttgaagtagaaacac |
22513573 |
T |
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| Q |
179 |
acagaagtgatg |
190 |
Q |
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||||||||||| |
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| T |
22513572 |
gcagaagtgatg |
22513561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 409
Target Start/End: Original strand, 39110404 - 39110507
Alignment:
| Q |
306 |
ttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtc |
405 |
Q |
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|||||| ||||||||||| |||||||||||||| ||||||| | || ||||| |||||||| ||||| || ||||||||||| ||||||||| ||| |
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| T |
39110404 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
39110503 |
T |
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| Q |
406 |
tgtg |
409 |
Q |
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|||| |
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| T |
39110504 |
tgtg |
39110507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 395
Target Start/End: Complemental strand, 33521232 - 33521128
Alignment:
| Q |
291 |
ttggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagct |
390 |
Q |
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||||||| ||||| | |||||||| || |||||||||||||| || ||| | | ||| |||||||| | |||||||||||||| ||| |||||||||| |
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| T |
33521232 |
ttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgggaagct |
33521133 |
T |
|
| Q |
391 |
gaagg |
395 |
Q |
| |
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||||| |
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| T |
33521132 |
gaagg |
33521128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 33521372 - 33521319
Alignment:
| Q |
148 |
atagcagcaggagcagttgaagtaggaacacacagaagtgatggtcagagaatt |
201 |
Q |
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|||||||| ||||||||||| ||||| || |||||||||||||| ||||||||| |
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| T |
33521372 |
atagcagctggagcagttgaggtaggtactcacagaagtgatggacagagaatt |
33521319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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