View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_19 (Length: 412)
Name: NF18398_low_19
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 7427822 - 7427502
Alignment:
| Q |
22 |
ttgtaattacttcgacattatttggtatcttaatggttgactcatttcatttatcggatgactttcttaatccagtcagacgggtggattctcaaaattt |
121 |
Q |
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| T |
7427822 |
ttgtaattacttcgacattatttggtatcttaatggttgactcatttcatttatcggatgactttcttaatccggtcagacgggtggattctcaaaattt |
7427723 |
T |
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| Q |
122 |
gtacggtcttctttacggttaatttggtttgcatgcgtttgggtaatctgaaaagaaagaaataacataatatttaatcataaggaacaacaactgcaac |
221 |
Q |
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| T |
7427722 |
gtacggtcttctttacaattaatttggtttgcatgtgtttgggtaatctgaaaagaaagaaataacataatatttaatcctaaggaacaacaaccgcaac |
7427623 |
T |
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| Q |
222 |
aattgttagagaaaattaagttcctttcgttttggtggttgaaaacaaaaaatgctactttgctctcgattatcataattagtagtggtttaatccctta |
321 |
Q |
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| T |
7427622 |
aattgttagagaaaattaaactcctttcgttttggtgtttgataacaaaaagtgctactttgctcttgattatcataat---tagtggtttaatcccttt |
7427526 |
T |
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| Q |
322 |
ttgtgtttgggtcttgacatgtag |
345 |
Q |
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| T |
7427525 |
atgtgtttgggtcttgacatgtag |
7427502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 3394859 - 3394907
Alignment:
| Q |
139 |
gttaatttggtttgcatgcgtttgggtaatctgaaaagaaagaaataac |
187 |
Q |
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| T |
3394859 |
gttaatttggcttgctttagtttgggtaatttgaaaagaaagaaataac |
3394907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 36024721 - 36024645
Alignment:
| Q |
225 |
tgttagagaaaattaagttcctttcgttttggtggttgaaaacaaaaaatgctactttgctctcgattatcataatt |
301 |
Q |
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| T |
36024721 |
tgttagataaaataaagcttctttcgttttggtggttgaaggcaaaacatgttaatttactttcggttatcataatt |
36024645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 33330425 - 33330474
Alignment:
| Q |
138 |
ggttaatttggtttgcatgcgtttgggtaatctgaaaagaaagaaataac |
187 |
Q |
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| T |
33330425 |
ggttaatttggcttgcttgtgtttgggtaatatggaaagaaagaaataac |
33330474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 21430957 - 21430912
Alignment:
| Q |
140 |
ttaatttggtttgcatgcgtttgggtaatctgaaaagaaagaaata |
185 |
Q |
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| T |
21430957 |
ttaatttggtttgcatgtgtttgggtaatttggaaagaaaaaaata |
21430912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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