View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18398_low_20 (Length: 411)
Name: NF18398_low_20
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_20 |
 | |
|
| [»] scaffold0077 (5 HSPs) |
| | |
|
| [»] scaffold0003 (6 HSPs) |
| | |
|
Alignment Details
Target: scaffold0077 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 133 - 337
Target Start/End: Complemental strand, 48621 - 48418
Alignment:
| Q |
133 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcacgtgttcaaggcacacatgacaatgaggctggaacaagtagtcgtcg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
48621 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcatgtgttcaaggaacacatgacaatgaggctggaaaaagtagtcgtcg |
48522 |
T |
|
| Q |
233 |
acgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48521 |
acgaatgaatcacaccacatctggttagtgataagaa-aaaaataattgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
48423 |
T |
|
| Q |
333 |
tacaa |
337 |
Q |
| |
|
||||| |
|
|
| T |
48422 |
tacaa |
48418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 133 - 337
Target Start/End: Complemental strand, 58376 - 58173
Alignment:
| Q |
133 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcacgtgttcaaggcacacatgacaatgaggctggaacaagtagtcgtcg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
58376 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcatgtgttcaaggaacacatgacaatgaggctggaaaaagtagtcgtcg |
58277 |
T |
|
| Q |
233 |
acgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58276 |
acgaatgaatcacaccacatctggttagtgataagaa-aaaaataattgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
58178 |
T |
|
| Q |
333 |
tacaa |
337 |
Q |
| |
|
||||| |
|
|
| T |
58177 |
tacaa |
58173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 48753 - 48685
Alignment:
| Q |
1 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaaggc |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48753 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaaggc |
48685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 58508 - 58440
Alignment:
| Q |
1 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaaggc |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58508 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaaggc |
58440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 358
Target Start/End: Complemental strand, 47945 - 47781
Alignment:
| Q |
190 |
ttcaaggcacacatgacaatgaggctggaacaagtagtcgtcgacgaatgaatcacaccacatctggttagtga--taagaagnnnnnnnnttgattctt |
287 |
Q |
| |
|
||||||| || ||||| |||| ||||||| ||||||||||||||||| | || |||||||||||||||||||| ||| || ||| ||||| |
|
|
| T |
47945 |
ttcaaggaactcatgataatgtggctggaccaagtagtcgtcgacgattccataacaccacatctggttagtgacataataa-------aattgtttctt |
47853 |
T |
|
| Q |
288 |
aatttatttcaagcttacttcaaattacaaata--tttataacaatttacaatatattactcatttttaataa |
358 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | ||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
47852 |
aatttatttcaagcttacttc-aattacaaatacttatataagaatatacattatattactcatttttaataa |
47781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 133 - 358
Target Start/End: Complemental strand, 36098643 - 36098423
Alignment:
| Q |
133 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcacgtgttcaaggcacacatgacaatgaggctggaacaagtagtcgtcg |
232 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36098643 |
gagatcacatgatgctatttaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatgacaatgaggctggaacaagtagtcgtcg |
36098544 |
T |
|
| Q |
233 |
acgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
332 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
36098543 |
acgaatcaatcacaccacatctggttagtgataaaaa-----attattgtttcttaatttatttcaagcttacttcaaattataaatacttataacaatt |
36098449 |
T |
|
| Q |
333 |
tacaatatattactcatttttaataa |
358 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
36098448 |
tacaatatattaatcatttttaataa |
36098423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 133 - 358
Target Start/End: Complemental strand, 22311592 - 22311369
Alignment:
| Q |
133 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcacgtgttcaaggcacacatgacaatgaggctggaacaagtagtcgtcg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
22311592 |
gagatcacatgatgccatttaatgatttgacaaatttaaattttacatcgtcacatgttcaaggaacacatgacaataaggctggaacaagtagtcgtcg |
22311493 |
T |
|
| Q |
233 |
acgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
332 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22311492 |
acgaatcaatcacaccacatctggttagtgata--aagaaaaaatattgtttcttaatttgtttcaagcttacttcaaattacaaatacttataacaatt |
22311395 |
T |
|
| Q |
333 |
tacaatatattactcatttttaataa |
358 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
22311394 |
tacaatatattaatcatttttaataa |
22311369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22313723 - 22313655
Alignment:
| Q |
1 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaaggc |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
22313723 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccaagcaaagacaacaagaattgtctagaaggc |
22313655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 36098775 - 36098707
Alignment:
| Q |
1 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaaggc |
69 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36098775 |
ctcaaaatgcaagaaattggagggaaaatatgagcaccgagcaaagacaacaagaattgtctagaaggc |
36098707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 358
Target Start/End: Complemental strand, 22311311 - 22311147
Alignment:
| Q |
190 |
ttcaaggcacacatgacaatgaggctggaacaagtagtcgtcgacgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaa |
289 |
Q |
| |
|
||||||| || ||||| |||||||||||| |||||| ||||||| || | |||||||||||||||||||||||| | | ||| ||||||| |
|
|
| T |
22311311 |
ttcaaggaactcatgataatgaggctggaccaagtaatcgtcgatgattcaatcacaccacatctggttagtgacataa-----tataattgtttcttaa |
22311217 |
T |
|
| Q |
290 |
tttatttcaagcttacttcaaattacaaata--tttataacaatttacaatatattactcatttttaataa |
358 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | ||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
22311216 |
tttatttcaagcttacttc-aattacaaatacttatataagaatatacattatattactcatttttaataa |
22311147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 358
Target Start/End: Complemental strand, 36098365 - 36098201
Alignment:
| Q |
190 |
ttcaaggcacacatgacaatgaggctggaacaagtagtcgtcgacgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaa |
289 |
Q |
| |
|
||||||| || ||||| ||||||| |||| |||||||| ||||| | | ||||||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
36098365 |
ttcaaggaactcatgataatgaggttggatcaagtagtagtcgataattctatcacaccacatctggttagtgatataa-----tataattgtttcttaa |
36098271 |
T |
|
| Q |
290 |
tttatttcaagcttacttcaaattacaaata--tttataacaatttacaatatattactcatttttaataa |
358 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | ||||| ||| |||| |||||||||||||||| |||| |
|
|
| T |
36098270 |
tttatttcaagcttacttc-aattacaaatacttatataagaatatacattatattactcattttttataa |
36098201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 133 - 358
Target Start/End: Original strand, 41931943 - 41932164
Alignment:
| Q |
133 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcacgtgttcaaggcacacatgacaatgaggctggaacaagtagtcgtcg |
232 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41931943 |
gagatcacatgatgccatgtaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatgacaatgaggctggaacaagtagtcgtcg |
41932042 |
T |
|
| Q |
233 |
acgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
332 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || ||| || ||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41932043 |
acgaatcaatcacaccacatctggttagtgataaaaa----aaatattgtttattaatttatttaaagcttacttcaaattacaaatacttataacaatt |
41932138 |
T |
|
| Q |
333 |
tacaatatattactcatttttaataa |
358 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
41932139 |
tacaatatattaatcatttttaataa |
41932164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 41931810 - 41931878
Alignment:
| Q |
1 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaaggc |
69 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
41931810 |
ctcaaaatgcaagaaatccgaggcaaaatatgagcaccgagcaaagagaacaagaattgtctagaaggc |
41931878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 150; Significance: 4e-79; HSPs: 6)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 133 - 358
Target Start/End: Complemental strand, 208183 - 207963
Alignment:
| Q |
133 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcacgtgttcaaggcacacatgacaatgaggctggaacaagtagtcgtcg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
208183 |
gagatcacatgatgccatttaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatgacaatgaggctggaataagtagtcgtcg |
208084 |
T |
|
| Q |
233 |
acgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
332 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || || ||| || ||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
208083 |
acgaatcaatcacaccacatctggttagtgaaaaaaa-----tatattgtttattaatttatttcaagcttacttcaaattacaaatacttataataatt |
207989 |
T |
|
| Q |
333 |
tacaatatattactcatttttaataa |
358 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
207988 |
tacaatatattaatcatttttaataa |
207963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 133 - 358
Target Start/End: Complemental strand, 213235 - 213015
Alignment:
| Q |
133 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcacgtgttcaaggcacacatgacaatgaggctggaacaagtagtcgtcg |
232 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
213235 |
gagatcacatgatgccatctaatgatttgacaaatttaaatttcacatcgtcacgtgttcaaggaacacatgacaatgaggctggaacaagtagtcgtcg |
213136 |
T |
|
| Q |
233 |
acgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
332 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || ||| || ||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
213135 |
acgaatcaatcacaccacatctggttagtgataaaaa-----aatattgtttactaatttatttcaatcttacttcaaattacaaatacttataacaatt |
213041 |
T |
|
| Q |
333 |
tacaatatattactcatttttaataa |
358 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
213040 |
tacaatatattaatcatttttaataa |
213015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 208315 - 208249
Alignment:
| Q |
1 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaag |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
208315 |
ctcaaaatgcaagaaatcggaggcaaaatataagcaccgagcaaagagaacaagaattgtctagaag |
208249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 358
Target Start/End: Complemental strand, 212957 - 212793
Alignment:
| Q |
190 |
ttcaaggcacacatgacaatgaggctggaacaagtagtcgtcgacgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaa |
289 |
Q |
| |
|
||||||| || ||| | |||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| | | ||| ||||||| |
|
|
| T |
212957 |
ttcaaggaactcatcataatgaggctggaccaagtagtcgtcgacgattcaatcacaccacatctggttagtgacataa-----tataattgtttcttaa |
212863 |
T |
|
| Q |
290 |
tttatttcaagcttacttcaaattacaaata--tttataacaatttacaatatattactcatttttaataa |
358 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| | ||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
212862 |
tttatttcaagcatacttcaaa-tacaaatacttatataagaatatacattatattactcatttttaataa |
212793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 190 - 358
Target Start/End: Complemental strand, 207905 - 207741
Alignment:
| Q |
190 |
ttcaaggcacacatgacaatgaggctggaacaagtagtcgtcgacgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaa |
289 |
Q |
| |
|
||||||| || ||| | |||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| | | ||| ||| || |
|
|
| T |
207905 |
ttcaaggaactcatcataatgaggctggaccaagtagtcgtcgacgattcaatcacaccacatctggttagtgacataa-----tataattgtttcaaaa |
207811 |
T |
|
| Q |
290 |
tttatttcaagcttacttcaaattacaaatatttata--acaatttacaatatattactcatttttaataa |
358 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| | ||| |||| ||||||||||||||||||||| |
|
|
| T |
207810 |
tttatttcaagcttacttc-aattacaaatacttatatcagaatatacattatattactcatttttaataa |
207741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 213367 - 213299
Alignment:
| Q |
1 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaaggc |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
213367 |
ctcaaaatgcaagaaatcggaggcaaaatatgagccatgagcaaagagaacaagaattgtctagaaggc |
213299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 133 - 344
Target Start/End: Complemental strand, 29640663 - 29640456
Alignment:
| Q |
133 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcacgtgttcaaggcacacatgacaatgaggctggaacaagtagtcgtcg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
29640663 |
gagatcacatgatgccatttaatgatttgacaaatttaaatttcacatcctcacgtgttcaacgtacaaatgacaatgaggctggaacaagtattcgtcg |
29640564 |
T |
|
| Q |
233 |
acgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
332 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
29640563 |
acgaatcaatcacaccacatctggttagtgataaaaa----aattattgtttcttaatttatttcaagcttacttcaaattacagatacctataataatt |
29640468 |
T |
|
| Q |
333 |
tacaatatatta |
344 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29640467 |
tacaatatatta |
29640456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 190 - 358
Target Start/End: Complemental strand, 29640384 - 29640222
Alignment:
| Q |
190 |
ttcaaggcacacatgacaatgaggctggaacaagtagtcgtcgacgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaa |
289 |
Q |
| |
|
||||||| || ||||| |||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||| | || ||| ||||||| |
|
|
| T |
29640384 |
ttcaaggaactcatgataatgaggctggaccaagtagtcgtcgacgattcaatcacaccgcatctggttagtgagataaa-----ataattgtttcttaa |
29640290 |
T |
|
| Q |
290 |
tttatttcaagcttacttcaaattacaaatatttataacaatttacaatatattactcatttttaataa |
358 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
29640289 |
tttatttcaagcttacttcaa-ttacaaatacttataagaatatacattatattactcatttttaataa |
29640222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29640795 - 29640727
Alignment:
| Q |
1 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaaggc |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
29640795 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgagcaaagacaacaagaattatctagaaggc |
29640727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 14789372 - 14789300
Alignment:
| Q |
133 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcacgtgttcaaggcacacatga |
205 |
Q |
| |
|
|||| ||||||||||||||| | |||||||||||||| |||| || ||||| ||||||||| |||||||| |
|
|
| T |
14789372 |
gagagcacatgatgccattttaggatttgacaaatttctattttgtattgtcacatgttcaaggaacacatga |
14789300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 133 - 354
Target Start/End: Original strand, 17099344 - 17099559
Alignment:
| Q |
133 |
gagatcacatgatgccatttaatgatttgacaaattttaatttcacatcgtcacgtgttcaaggcacacatgacaatgaggctggaacaagtagtcgtcg |
232 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
17099344 |
gagatcacatgatgccatttaataat--gacaaatttaaatttcacatcgtcacgtgttcaacgtacacatgacaatgaggctggaacaagtattcgtcg |
17099441 |
T |
|
| Q |
233 |
acgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaatttatttcaagcttacttcaaattacaaatatttataacaatt |
332 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
17099442 |
acgaatcaaccacaccacatctggttagtgataaaaa----aaatattttttcttaatttatttcaagcttacttcaaattacagatacttataacaatt |
17099537 |
T |
|
| Q |
333 |
tacaatatattactcattttta |
354 |
Q |
| |
|
|||||||||||| || |||||| |
|
|
| T |
17099538 |
tacaatatattaatccttttta |
17099559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 358
Target Start/End: Original strand, 17099621 - 17099783
Alignment:
| Q |
190 |
ttcaaggcacacatgacaatgaggctggaacaagtagtcgtcgacgaatgaatcacaccacatctggttagtgataagaagnnnnnnnnttgattcttaa |
289 |
Q |
| |
|
||||||| || ||||| |||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||| | || ||| ||||||| |
|
|
| T |
17099621 |
ttcaaggaactcatgataatgaggctggaccaagtagtcgtcgacgattcaatcacaccgcatctggttagtgagataaa-----ataattgtttcttaa |
17099715 |
T |
|
| Q |
290 |
tttatttcaagcttacttcaaattacaaatatttataacaatttacaatatattactcatttttaataa |
358 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
17099716 |
tttattttaagcttacttcaa-ttacaaatacttataagaatatacattatattactcatttttaataa |
17099783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17099214 - 17099280
Alignment:
| Q |
1 |
ctcaaaatgcaagaaatcggaggcaaaatatgagcaccgatcaaagacaacaagaattgtctagaag |
67 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17099214 |
ctcaaaatgcaagaaatcagaggcaaaatatgagcaccgagcaaagacaacaagaattgtctagaag |
17099280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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