View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18398_low_22 (Length: 385)
Name: NF18398_low_22
Description: NF18398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18398_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 7750158 - 7750514
Alignment:
| Q |
19 |
ctaacttttgttccaccctcgccctcatcaccaatggacaacaatgatgtgtttaatgaaatctgtttttcattgattctaatagatttcactccaatga |
118 |
Q |
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| T |
7750158 |
ctaacttttgttccaccctcgccctcatcaccaatggacaacaatgatgtgtttaatgaaatctgtttttcatcgattctaatagatttcactccaatga |
7750257 |
T |
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| Q |
119 |
aatattcagctgcaggtcttccatggaaaattggcccggccgagttatcaggattttcgatcagtggtgtaaacataagaaatttggaaacatcaatccc |
218 |
Q |
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| T |
7750258 |
aatattcagctgcaggtcttccatggaaaattggcccggccgagttatcaggattttcgatcagtggtgtaaacataagaaatttggaaacatcaatccc |
7750357 |
T |
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| Q |
219 |
gggaaggaaaacataagggccatcaccaaagaacaaaacaccactagatgtttttgaagaactcaaacatattgcaaactttgttttgaagttgaaagca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7750358 |
gggaaggaaaacataagggccatcaccaaagaacaaaacaccactagatgtttttgaagaactcaaacatattgcaaactttgttttgaagttgaaagca |
7750457 |
T |
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| Q |
319 |
gaagcaaaaagtgaaggtaatgaaatattactctttccaaaacctaccatgcctttg |
375 |
Q |
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| T |
7750458 |
gaagcaaaaagtgaaggtaatgaaatattactctttccaaaacctgccatgcctttg |
7750514 |
T |
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